Plant FIBer expression Database

Lus10014656 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20410 286 / 2e-92 RNA-binding ASCH domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006580
[exp]
460 / 2e-160 AT2G20410 327 / 2e-111 RNA-binding ASCH domain protein (.1)
Lus10028672
[exp]
430 / 1e-147 AT2G20410 309 / 1e-103 RNA-binding ASCH domain protein (.1)
Lus10042558
[exp]
320 / 3e-106 AT2G20410 306 / 4e-104 RNA-binding ASCH domain protein (.1)
Lus10022016
[exp]
310 / 3e-102 AT2G20410 285 / 4e-96 RNA-binding ASCH domain protein (.1)
Lus10025361
[exp]
244 / 3e-74 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Lus10005846
[exp]
229 / 9e-73 ND /
Lus10019586
[exp]
226 / 7e-72 ND /
Lus10022968
[exp]
237 / 1e-68 AT1G10790 214 / 8e-63 unknown protein
Lus10039394
[exp]
219 / 1e-67 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G017900
[exp]
329 / 3e-109 AT2G20410 288 / 2e-96 RNA-binding ASCH domain protein (.1)
Potri.013G045800
[exp]
311 / 8e-104 AT2G20410 281 / 3e-95 RNA-binding ASCH domain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0178 PUA PF04266 ASCH ASCH domain
Representative CDS sequence
>Lus10014656 pacid=23165668 polypeptide=Lus10014656 locus=Lus10014656.g ID=Lus10014656.BGIv1.0 annot-version=v1.0
ATGGCTGAGGCTTTCGTGCATGGTAGGTGGAACAAAGTGTTGTATGTACTAACGATGAATCACGAAGCAAGGGTCGAATCTATTGAGAGCGATGGGGTCG
AACTGAAACCATACCACCTCCACCACTTTTGGCGATCTTTGGAATACCGTCTTCCTGTAGACAGTGAGAAGCGGGAAGACCATGACGCGACAGATCGCAC
CATCCTCAGCGGAATGGTGCAGATGATTTGTGATAGAACTGAGCCCGCTGTACGGGCTTTGACTTCACTGGTGCTGTCCCAGTATCAATCTGAATCTGAA
GGAGTGAAAGAGCCGAAGAAGTCGGACGCGCCTAAAGGCAAGCCCCGTACGCGAAAGACCGATGGGCGGCATCCTTCGTACCACGAGCATGCGGGTGCTC
ATTGCACCCTATCTAAGGGCAAGACCAAATCAGGTAGCGGAACCCCGCAAGCGGCTAAACCCACCCCAAGCAAGTCTAAAACCTCTATTCTGACAGAGCA
AAGAGACAGTCGGAAGAACAATTACCGAAAGATGCGCGGCGGCGGAAGGAGCGGCGGCAGGGGTGTCGGGGGAAGGGGTGGCGCCGGCAACTACACCAAC
CCCTGCTTGACTATGCACCAGCCTTGGGCTTCTCTGCTCGTCCACGGCATTAAACGGATCGAAGGCCGATCCTGGTCGGCTCCCATTCGTGGGCGTTTGT
GGATTCATGCTGCAAGTAAAGTTCCAGAGGAAGAGACAATCAAGGCAATGGAGGATTTCTACAGGGAAATCTATGCGTTGAATGGCGTTACTGATATCAA
GTTACTGATATCAAGCTGCATTGAGGTAGTTGGATGTCTGAAGCTTGACGAAGTAGCGAATTGGGAGGCAATACCTGAAGGGGTGAGAGTAGAAGGACAG
ACTGATTTTTGTTGGCTTTGTGAATCGCCACAGAAATTGCTTATACCATTTGAGATGAGAGGCAATCAAGGTGTTTATAACTTGGAAAAGAAGATATTTG
AGTCTGCACTTAGAGGTCTCGTCCCGGTTAAAGGACCAATGCCAGTGAAGTTTCCCCTTCCGAATCCTCAAGATCGCTTCTCGTTGTGCCCTGGCTCTAT
TAGCTCTCAGACCCGATCAAATCCATCTGAAGTAGAGAAGTCATCAAGTCTTATTGCAGCTATTGATTCTGCTCGTGCAGCAGCTACACAGTTCAGCAAA
AAAGACCAGAATCATGATCCCACCGAAAATTCGAGCTCAACCAGAAAATACGAATTGAGAAGCAAGTCGTCTTCTGAACAGAGCGAGATTCCAACGACGA
ATTCTCCTGATGTTTGTGAGGAAGAACCGAAACTGTTGAAGGAATTGAAACCAGACAACCAGGTTGAGCCCGAAGAGGGTAGCAGCCGCCGGATCAATTC
CCAAGCAGGTTTGCATCAACGTCCTAGAGCTTCTTCAAAGATGCTTGACCCTGCTATTCGTTTTGAGCTGCATCTAACCAGCCATTGGCTTGCAGCTTTT
CGCAGCAGAAATACGGGGGTTGAAGCCAACCTGAGTGCAAGCTTCATCGAAAGGGATCAAAAAGCGAGTAAAAAAGTTTCTATTTTTTGCTGTGTTGTAG
GATTGTTTGGAGAGGATCTGATGGAAGGAGACTTGGGCTTCTACTTAAAGGGCACAAGAACTCAAATTTCCATGCACCTGATCTGA
AA sequence
>Lus10014656 pacid=23165668 polypeptide=Lus10014656 locus=Lus10014656.g ID=Lus10014656.BGIv1.0 annot-version=v1.0
MAEAFVHGRWNKVLYVLTMNHEARVESIESDGVELKPYHLHHFWRSLEYRLPVDSEKREDHDATDRTILSGMVQMICDRTEPAVRALTSLVLSQYQSESE
GVKEPKKSDAPKGKPRTRKTDGRHPSYHEHAGAHCTLSKGKTKSGSGTPQAAKPTPSKSKTSILTEQRDSRKNNYRKMRGGGRSGGRGVGGRGGAGNYTN
PCLTMHQPWASLLVHGIKRIEGRSWSAPIRGRLWIHAASKVPEEETIKAMEDFYREIYALNGVTDIKLLISSCIEVVGCLKLDEVANWEAIPEGVRVEGQ
TDFCWLCESPQKLLIPFEMRGNQGVYNLEKKIFESALRGLVPVKGPMPVKFPLPNPQDRFSLCPGSISSQTRSNPSEVEKSSSLIAAIDSARAAATQFSK
KDQNHDPTENSSSTRKYELRSKSSSEQSEIPTTNSPDVCEEEPKLLKELKPDNQVEPEEGSSRRINSQAGLHQRPRASSKMLDPAIRFELHLTSHWLAAF
RSRNTGVEANLSASFIERDQKASKKVSIFCCVVGLFGEDLMEGDLGFYLKGTRTQISMHLI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20410 RNA-binding ASCH domain protei... Lus10014656
[exp]
0 1
AT3G21480 BRCT domain-containing DNA rep... Lus10038633
[exp]
3.0 0.8900
AT5G65540 unknown protein Lus10025712
[exp]
6.5 0.8844
AT1G11880 transferases, transferring hex... Lus10000535
[exp]
7.5 0.8431
AT3G52120 SWAP (Suppressor-of-White-APri... Lus10037485
[exp]
9.2 0.8652
AT1G09920 TRAF-type zinc finger-related ... Lus10028213
[exp]
12.5 0.8530
AT1G76480 unknown protein Lus10006035
[exp]
13.3 0.8818
Lus10014678
[exp]
17.3 0.8721
AT4G01310 Ribosomal L5P family protein (... Lus10010251
[exp]
17.5 0.8372
AT1G68080 2-oxoglutarate (2OG) and Fe(II... Lus10019134
[exp]
17.7 0.7860
AT5G59190 subtilase family protein (.1) Lus10000396
[exp]
18.4 0.8336

Lus10014656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.