Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08650 352 / 1e-122 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylase kinase 1 (.1.2) AT3G04530 342 / 5e-119 ATPPCK2, PEPCK2, PPCK2 phosphoenolpyruvate carboxylase kinase 2 (.1) AT1G12580 211 / 1e-64 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT4G04720 207 / 5e-63 CPK21 calcium-dependent protein kinase 21 (.1) AT1G12680 204 / 1e-62 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G61950 205 / 3e-62 CPK19 calcium-dependent protein kinase 19 (.1) AT1G76040 204 / 7e-62 CPK29 calcium-dependent protein kinase 29 (.1.2) AT5G19450 203 / 1e-61 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12180 200 / 2e-60 CPK17 calcium-dependent protein kinase 17 (.1) AT1G50700 200 / 2e-60 CPK33 calcium-dependent protein kinase 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042560 [exp] 410 / 6e-146 AT1G08650 344 / 1e-119 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10011824 [exp] 242 / 9e-81 AT1G08650 227 / 3e-75 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10036464 [exp] 208 / 5e-64 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10021190 [exp] 200 / 6e-64 AT3G04530 186 / 1e-58 phosphoenolpyruvate carboxylase kinase 2 (.1) Lus10041132 [exp] 205 / 7e-63 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10015009 [exp] 206 / 9e-63 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10008958 [exp] 204 / 4e-62 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10038889 [exp] 204 / 4e-62 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10023346 [exp] 202 / 2e-61 AT5G12180 780 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G046100 [exp] 415 / 7e-148 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.019G018100 [exp] 412 / 1e-146 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.010G071400 [exp] 330 / 2e-114 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.008G166500 [exp] 324 / 6e-112 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.012G134600 [exp] 213 / 2e-65 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.015G136900 [exp] 209 / 7e-64 AT1G12580 587 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.003G120800 [exp] 208 / 1e-63 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.017G048400 [exp] 204 / 1e-62 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.005G251500 [exp] 203 / 4e-62 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.005G245000 [exp] 203 / 7e-62 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014657 pacid=23165590 polypeptide=Lus10014657 locus=Lus10014657.g ID=Lus10014657.BGIv1.0 annot-version=v1.0 ATGTGCTCTGAAACTCTCAAGAACAACTACCAGATCTGCGAAGAGATCGGCCGCGGACGATTCGGCGTCATCTCCCGCTGCTTCTCCCCGATCAAGAACT CCTCCTTTGCCTGCAAGATCATCGACAAATCCCTCCTCCTCGACTCCATCGACCGCGAGTGCGTCGACAAGGAGCCCAAGATCATGCTTCTCCTCTCCCC TCACCCCAACATCGTCCAGATCCACGACGCCTTCGACTCCGATGAGTCCTTAACAATGGTAATCGACCTCTGCGAGCCCTACACTCTCTACGACCTCGTC ATCAAGACCGGAACCGGCATTCCCGAGTCCCGATCGGCGGGGATAATGCGGCAGTTGCTCGAGGCGGTCGCGCACTGCCACCGATTCGGCATCGTCCACC GGGACATCAAGCCGGACAACGTTCTCTTCGATTCGAGGGGCCGGGTCAAGCTGGCGGATTTCGGGTCGGCCGATTGGGTCGGGCCGGGTAATCTCAGCGG GGTCGTCGGGACACCGTACTACGTGGCTCCCGAGGTTCTGATGGGAAGGGATTACGGAGAGAAAGTGGATGTGTGGAGTGCCGGCGTCGTTTTGTATGTG ATGCTAGCCGGATTCCCGCCGTTTTACGGCGACGACGTGGAGGAGATTTTCGAGGCGGTCGTCAGGGGAAACCTCCGGTTCCCTGCCAAGGCGTTTCGAA ACGTTTCTCCTGAGGCGAAGGATTTCCTTAGGAAGCTCATCTGTCGAGACTCTTCCAGAAGGTTCTCCGCCGAGCAAGCCCTCCGTAAGTTCACATTTTC TAACCATTTTGAATTTCGAATCAACCCAAACCGAAACCGAACTAAACCGAACTAA
AA sequence Show only first row Show all	>Lus10014657 pacid=23165590 polypeptide=Lus10014657 locus=Lus10014657.g ID=Lus10014657.BGIv1.0 annot-version=v1.0 MCSETLKNNYQICEEIGRGRFGVISRCFSPIKNSSFACKIIDKSLLLDSIDRECVDKEPKIMLLLSPHPNIVQIHDAFDSDESLTMVIDLCEPYTLYDLV IKTGTGIPESRSAGIMRQLLEAVAHCHRFGIVHRDIKPDNVLFDSRGRVKLADFGSADWVGPGNLSGVVGTPYYVAPEVLMGRDYGEKVDVWSAGVVLYV MLAGFPPFYGDDVEEIFEAVVRGNLRFPAKAFRNVSPEAKDFLRKLICRDSSRRFSAEQALRKFTFSNHFEFRINPNRNRTKPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10014657 [exp]	0	1
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	3.9	0.8611
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	4.0	0.8638
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	5.4	0.8727
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	9.5	0.8488
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	11.5	0.8595
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10041823 [exp]	12.7	0.8317
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	14.4	0.8704
AT5G67020			unknown protein		Lus10019345 [exp]	15.9	0.8640
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	16.2	0.8566
AT3G56820			unknown protein		Lus10010438 [exp]	17.3	0.8477

Compare expression of checked genes

Lus10014657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.