Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08630 533 / 0 THA1 threonine aldolase 1 (.1.2.3.4.5) AT3G04520 518 / 0 THA2 threonine aldolase 2 (.1.2) AT1G07270 45 / 8e-05 Cell division control, Cdc6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000556 [exp] 766 / 0 AT1G08630 536 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Lus10009446 [exp] 82 / 1e-16 AT2G29680 584 / 0.0 cell division control 6 (.1.2) Lus10011627 [exp] 82 / 1e-16 AT2G29680 576 / 0.0 cell division control 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018500 [exp] 580 / 0 AT1G08630 539 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Potri.013G046400 [exp] 575 / 0 AT1G08630 524 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Potri.001G250200 [exp] 55 / 5e-08 AT1G07270 626 / 0.0 Cell division control, Cdc6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01212 [flax] [poplar] Beta_elim_lyase Beta-eliminating lyase
Representative CDS sequence Show only first row Show all	>Lus10014658 pacid=23165573 polypeptide=Lus10014658 locus=Lus10014658.g ID=Lus10014658.BGIv1.0 annot-version=v1.0 ATGGTGGCAGAAAAGCAACATTTTTTCCCTCGGCTGGAAATAGATCCTTCCAAAATGGTGACGAGGACTGTCGATCTTAGATCAGATACTGTTACCAAGC CGTGTGAGGGGATGAGAGCTGCCATGGCAAAAGCAGAGGTGGACGACGATGTATTGGGGAACGATCCAAGTGCATTGCGATTGGAGAACGAAATGGCGAG GATCATGAGCAAGGAAGCCGCGTTGTTCGTTCCTTCGGGGACGATGGGGAACCTAATTAGTGTGCTTGTGCACTGTAACATCAGGGGGAGTGAAGTGATT CTGGGAGACAATTCCCACATCCATATTTACGAGAATGGCGGCATTGCAACCATCGGAGGCGTCCATCCCAGGACAGTGAAGAACAACGACGATGGGACGA TGGATTTGGATATGATCGAGGCTAAGATTAGGGACCCTAGAGGGGAGCTCGTGTATCCGATCACCAGGCTCATTTGTTTGGAGAACTCACATGCCAACAC GGGTGGGAGATGCCTATCTGTGGATTATACAGACCGAGTTGGAGAGTTGGCGAAAAAGCACGGTCTGAAGCTTCACATCGATGGGGCTCGCATTTTTAAT GCTGCAGCTTCTCTCGGAGTTGCTGTTGACAGGCTTGTACAAGCAGCAGATTCAGTTTCGGTATGCTTATCGAAGGGTATAGGCGCACCAGTTGGATCGG TTATAGTTGGTTCTGAAAGCTTTATCGCCAAGGCTAGGATTCTGAGGAAAACTCTGGGGGGAGGGATGAGACAAGTCGGAATCCTTTGCTCCGCTGCTTT GTTTGCTGTAGAAAACAATGTTGCAAAGCTACAGAGTGATCACAAGAATGCCAAGACACTAGCAGTTGGACTCAATGAAATCAAAGGACTGAAGGTGAAT GTTGCAGCTGTAGAAACAAACATTGTTTATGTAGATTTAGAGGAGAGCTCGAACCTCACGGCTGAGAAACTATACAAGAACTTGCAGCAACATGGTGTGG TTGTAATGATAGAGGGTCCATACAGAATAAGGATTGTGATCCACCATCAGATCTCAGAAAGCGATGTGCAGTACACTCTGTCATGCTTCAAGCTGAACAA ATCCGACGTGGAGACTTGCAAGTCAAGAAAGATCCCACCACTGGCCATTTCTGAGTTCTTCCGTATGTGCAGAGTGCTTCATGACCAGCTACAGGGACTA GTGAAGCTTGGACAGTCTCTTGGCGACGACAAAGCTTAG
AA sequence Show only first row Show all	>Lus10014658 pacid=23165573 polypeptide=Lus10014658 locus=Lus10014658.g ID=Lus10014658.BGIv1.0 annot-version=v1.0 MVAEKQHFFPRLEIDPSKMVTRTVDLRSDTVTKPCEGMRAAMAKAEVDDDVLGNDPSALRLENEMARIMSKEAALFVPSGTMGNLISVLVHCNIRGSEVI LGDNSHIHIYENGGIATIGGVHPRTVKNNDDGTMDLDMIEAKIRDPRGELVYPITRLICLENSHANTGGRCLSVDYTDRVGELAKKHGLKLHIDGARIFN AAASLGVAVDRLVQAADSVSVCLSKGIGAPVGSVIVGSESFIAKARILRKTLGGGMRQVGILCSAALFAVENNVAKLQSDHKNAKTLAVGLNEIKGLKVN VAAVETNIVYVDLEESSNLTAEKLYKNLQQHGVVVMIEGPYRIRIVIHHQISESDVQYTLSCFKLNKSDVETCKSRKIPPLAISEFFRMCRVLHDQLQGL VKLGQSLGDDKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	0	1
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	1.7	0.9786
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	2.0	0.9781
					Lus10018816 [exp]	3.2	0.9674
AT1G19530			unknown protein		Lus10002540 [exp]	3.5	0.9759
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10019970 [exp]	4.0	0.9700
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	4.2	0.9677
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	4.4	0.9616
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	8.0	0.9629
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	9.4	0.9741
AT5G65030			unknown protein		Lus10026048 [exp]	9.9	0.9535

Compare expression of checked genes

Lus10014658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.