Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04500 303 / 3e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54900 63 / 3e-11 ATRBP45A RNA-binding protein 45A (.1) AT3G14100 63 / 4e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 63 / 4e-11 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G11650 62 / 7e-11 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17370 62 / 8e-11 UBP1B oligouridylate binding protein 1B (.1.2) AT3G19130 61 / 1e-10 ATRBP47B RNA-binding protein 47B (.1) AT4G27000 61 / 2e-10 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G47490 58 / 1e-09 ATRBP47C RNA-binding protein 47C (.1.2) AT5G19350 57 / 3e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000555 [exp] 351 / 5e-123 AT3G04500 329 / 8e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10021754 [exp] 67 / 1e-12 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10027641 [exp] 66 / 5e-12 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 66 / 6e-12 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10019889 [exp] 65 / 9e-12 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10027911 [exp] 64 / 9e-12 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10041109 [exp] 65 / 1e-11 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10014029 [exp] 64 / 1e-11 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10012071 [exp] 64 / 1e-11 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018900 [exp] 327 / 8e-114 AT3G04500 321 / 6e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G046900 [exp] 310 / 4e-107 AT3G04500 291 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G279600 [exp] 66 / 4e-12 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.014G034600 [exp] 66 / 6e-12 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.006G139300 [exp] 65 / 6e-12 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G423400 [exp] 65 / 1e-11 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.018G002300 [exp] 63 / 3e-11 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.002G128100 [exp] 63 / 4e-11 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.003G069000 [exp] 62 / 5e-11 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 62 / 6e-11 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014659 pacid=23165625 polypeptide=Lus10014659 locus=Lus10014659.g ID=Lus10014659.BGIv1.0 annot-version=v1.0 ATGTCGTTCCCTCCGTCATCATCAGCATCATCAGCATACACATACTCAGCTCCGTCGACGTCTTCAACGCAGACGAACAATTCCTACTTTCCGACGCCAT TTCATCTCCAGCAGCAGCCGTACGTCGTCGCAGCCCCTGCAGTGCCAGCTCCACCTCCTGCTATACAGCCAGCGCCCGTTTATCCAGCTGCTCCCGTCGG TCCCGTTTACTCCATCCCGCAATTCCAGCAGGCACATCAATTGTTCCAAAGAGATGCACAGGCGATTACTCCGGAGGCTCTTGAAGGCGTGAAAGCTGCC TTGGCAAGCAGTGAGATTGAGCACAAGGCTGAAACCAAGAAAAAAGCTGTTCCTCGTAAAGCTGCTGGTCAGACTTGGGAGGATCCTACTCTGGCTGAGT GGCCTGAAAATGACTATAGACTGTTTTGCGGTGATCTTGGGAATGAGGTGAATGATGATGTTCTCTCAAAGGCATTTTCAAGGTTCCCTTCCTTTAACAT GGCCAAGTTCATCAATTTACTGATGAGTCTTATTGGTGGTAGAGTTGATGTGAACAAGCTGTGTAAGGTTGTTAGAGATAAGCGAACAGGAAAAACAAAG GGTTATGGATTCGTAAGCTTCTCTAATATTACGGACCTTGCTGCAGCTTTAAAGGAGATGAACGGTAAATATGTCGGCAATCGTCCCATCAAGCTACGCA AGAGCAATTGGAAAGAAAGGACAGATTATGACGCATTAGGAAGACACAAGAACCACCATCAGAAGAAGCCCAAGGTTTCAAAGAAGAGTGTACTCCACAA GTAA
AA sequence Show only first row Show all	>Lus10014659 pacid=23165625 polypeptide=Lus10014659 locus=Lus10014659.g ID=Lus10014659.BGIv1.0 annot-version=v1.0 MSFPPSSSASSAYTYSAPSTSSTQTNNSYFPTPFHLQQQPYVVAAPAVPAPPPAIQPAPVYPAAPVGPVYSIPQFQQAHQLFQRDAQAITPEALEGVKAA LASSEIEHKAETKKKAVPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKFINLLMSLIGGRVDVNKLCKVVRDKRTGKTK GYGFVSFSNITDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALGRHKNHHQKKPKVSKKSVLHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10014659 [exp]	0	1
AT1G28120			unknown protein		Lus10026630 [exp]	2.8	0.9512
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	3.2	0.9439
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	5.3	0.9398
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	6.3	0.9109
AT5G37190		CIP4	COP1-interacting protein 4 (.1...		Lus10006453 [exp]	6.5	0.9312
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	6.7	0.9413
AT2G25670			unknown protein		Lus10017738 [exp]	10.4	0.9298
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	12.6	0.9376
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	12.6	0.9250
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	13.0	0.9297

Compare expression of checked genes

Lus10014659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.