Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04760 521 / 7e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 344 / 5e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 242 / 9e-72 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 241 / 3e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G79080 238 / 9e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 237 / 7e-70 RPF2 rna processing factor 2 (.1) AT1G63400 234 / 2e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 230 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 227 / 6e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16710 224 / 4e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000554 [exp] 1073 / 0 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014245 [exp] 238 / 1e-70 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10031792 [exp] 223 / 4e-65 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031215 [exp] 220 / 5e-64 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 222 / 3e-63 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 220 / 6e-63 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 220 / 3e-62 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 220 / 9e-62 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 216 / 2e-61 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047000 [exp] 543 / 0 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 542 / 0 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G109500 [exp] 340 / 1e-109 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 257 / 6e-78 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 253 / 2e-76 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G150100 [exp] 243 / 8e-73 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 240 / 2e-71 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 240 / 4e-71 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 237 / 4e-70 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G032100 [exp] 235 / 6e-70 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014660 pacid=23165612 polypeptide=Lus10014660 locus=Lus10014660.g ID=Lus10014660.BGIv1.0 annot-version=v1.0 ATGAGTGTAGTGTTCTCCACCGATTTCATCCCTCTAGGCCGCCAACTCCACTTACCACCCAGAGTTTTCACCTCCATTATACCCAGGAACTGCTTCAATG ACAACCACAACCACAACCATAACAACAACTACTACGCTGGAGCTTCGTTAACTCTTTCAGAGCAGACGAAGCTGACCAATTTCACCAAACAAATCAACAG GGCCACAAGGTTAGGGAACTACGAGGAGGGTCTCTACCACCTGGAGCTGAGCATCATTCAAGGCTGCGAGCCCGATGTGATTTCCTGTACCAGGCTGACG AAGGCCTTCTTCAAAATCAAAAAGTACGACAAGGCGCTCAGGGTTATGGAAATAATGGAGCTGTACGGTAACCCCGACATTTTCTCTTACAACGCCTTGT TCGCTTGCTTCTGTAAAATCAACGAGATCGACAAGGCGAATCAGGTGATCGAAAGAATGAAGAGCAGAGGCTACACCCCTGACGCCGTTACCTACAACGT CATGATTCGCAACTACTGCGCGAAGAGGAAGCTCCATATGGCATTCAAGGTGTTCGACGAAATGCTCAAGGATGGATGCCAGCCGTCTGTGATTACTTAC ACTACCTTGATCGAAGCATTGATCACCAGTCGCCGATCGATCGACGATGCTCTCAACCTCTTCGAAGACATGCTTGTGAAGGGCGTCACGCCGGATTATT ATGTCTACAATGTCGTGATTCAAGGGCTGTGCAAACATGGGATGGTGGATCGAGCTCTCGAGATAGTTTGTAACTTCAAGTTTGAGTTTCGGCTGAACGC CTTTTGTTACAACGCACTGTTAATGGTTGCTCTTCGTCAAGGTAAATTGAAGCTGGCGGCATCGTTGATGTCGGAGATTATATCGGCCGGGTATAAGCCT GACCTCGTTACTTGCAGCAATTTGATTAGCCTGTTATGCCGCGAGCAGATAGTGGATGAAGCAGTGAACTTGGTGAAGTCCATGAAAAGGAAAGGGCTCA AACCTGATGCGAGTTGCTACGATCCTTTGATTTCTTCCTTCTGCAAGGAAGGGAAATTCGACGAGGCGGTCAAGGTTTTGAATTATATGATCGCCGACGG TTGCGTTCCCAACATCGTAAACTACATCGGGATCATATCGGGGTTGTGCAAGTCCGGGAATGCTGATTACGCAGTCAAAATGTTTGGAAAACTCGACGAA GTCAGGTGTCCGCCAGATGTCAGCTCTTACAACACAATGTTCAGCGCCTTGTGGAATGCCGGAGACAGGTACCGAGCGTTGGAAGTCGTGATGAAGATGC TCCAGGACGATGGGATTGATCCCGATGTGTTCACTTACCACACGCTTATCTCATGCTTGAGTCAAGACGGGATGGTTGACGAAGCCAAGGGATTGTTGGA TGATATGCGTGAGAGCAAATGTAAGCCGACTGCAGTGACTTATAACATCATGATTCTCGGGTTGTGCAAGACGAGGAGGATTCACGAGGCGATTGATATG CTAGCAGCAATGGTTATCGACGAGGGTTGCCAGCCTAACGAAACCACTTACAGGTTGTTGGCGGAAGGAATCTGGTTCTTGGGATGTAATGCCGAAGCTC AGCAATTGGTGAAATCTCTTTACGAAATGGAAGCCATCTCCGAGCAATCGATGGAACACCTGGCAGCAAAGTTACCTTTGCCCAACGATGCAAAAGATCT TCCTGAAGTGGTACTTCGTGTTCCAGAAAACGAAGATTATATTGTTTAG
AA sequence Show only first row Show all	>Lus10014660 pacid=23165612 polypeptide=Lus10014660 locus=Lus10014660.g ID=Lus10014660.BGIv1.0 annot-version=v1.0 MSVVFSTDFIPLGRQLHLPPRVFTSIIPRNCFNDNHNHNHNNNYYAGASLTLSEQTKLTNFTKQINRATRLGNYEEGLYHLELSIIQGCEPDVISCTRLT KAFFKIKKYDKALRVMEIMELYGNPDIFSYNALFACFCKINEIDKANQVIERMKSRGYTPDAVTYNVMIRNYCAKRKLHMAFKVFDEMLKDGCQPSVITY TTLIEALITSRRSIDDALNLFEDMLVKGVTPDYYVYNVVIQGLCKHGMVDRALEIVCNFKFEFRLNAFCYNALLMVALRQGKLKLAASLMSEIISAGYKP DLVTCSNLISLLCREQIVDEAVNLVKSMKRKGLKPDASCYDPLISSFCKEGKFDEAVKVLNYMIADGCVPNIVNYIGIISGLCKSGNADYAVKMFGKLDE VRCPPDVSSYNTMFSALWNAGDRYRALEVVMKMLQDDGIDPDVFTYHTLISCLSQDGMVDEAKGLLDDMRESKCKPTAVTYNIMILGLCKTRRIHEAIDM LAAMVIDEGCQPNETTYRLLAEGIWFLGCNAEAQQLVKSLYEMEAISEQSMEHLAAKLPLPNDAKDLPEVVLRVPENEDYIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	0	1
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	1.4	0.9678
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	3.2	0.9531
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	4.5	0.9453
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	4.6	0.9529
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	4.9	0.9408
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	5.3	0.9505
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10012055 [exp]	6.5	0.9352
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	8.4	0.9378
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	8.5	0.9441
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	8.5	0.9401

Compare expression of checked genes

Lus10014660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.