Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23340 610 / 0 CKL10 casein kinase I-like 10 (.1) AT4G14340 589 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT1G03930 583 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G28540 578 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT5G44100 573 / 0 CKL7 casein kinase I-like 7 (.1) AT5G43320 568 / 0 CKL8 casein kinase I-like 8 (.1) AT1G04440 562 / 0 CKL13 casein kinase like 13 (.1) AT4G26100 529 / 0 CKL1, CK1 casein kinase 1 (.1) AT1G72710 526 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT5G57015 519 / 0 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000553 [exp] 821 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 735 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10042570 [exp] 731 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 613 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 611 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10033913 [exp] 593 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10024916 [exp] 584 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10022908 [exp] 552 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10006879 [exp] 532 / 0 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047200 [exp] 628 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.010G070400 [exp] 624 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 614 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.002G036000 [exp] 597 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.005G226900 [exp] 597 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.003G043500 [exp] 539 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 536 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 532 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 531 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 496 / 2e-174 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014661 pacid=23165589 polypeptide=Lus10014661 locus=Lus10014661.g ID=Lus10014661.BGIv1.0 annot-version=v1.0 ATGGATCATCTTGTCGGTGGGAAATTCAAACTGGGCCGGAAGATTGGCAGCGGATCTTTTGGGGAGCTATATATCGCTGTTAATGTGCAGACAGGAGAAG AAGTTGGTGTCAAGCTGGAGCCTGTTAAGACAAAACATCCCCAGCTACAGTATGAGTCGAAAATTTACATGATTCTGCAAGGCGGGACTGGGATTCCTGA GCTCAAGTGGTATGGTGCTGAAGGTGACTACAATGTAATGGCCATAGACCTTCTAGGCCCGAGCCTAGAAGACTTGTTCAATTACTGCAACCGGAAATTC TCTTTGAAGACGGTTTTGATGCTTGCAGATCAGTTGATTAACAGAGTTGAGTATATGCATTCAAGGGGTTTCCTTCACCGTGATATAAAGCCTGACAACT TTTTAATGGGGCTAGGACGCAAAGCCAATCAGGTGTATGTTATTGACTATGGACTGGCAAAGAAGTATAGGGATCTCCAAACTCATAAGCATATACCATA CAGGGAAAACAAAAATCTCACAGGCACAGCTAGATATGCTAGTGTTAACACTCACATGGGAGTTGAACAGAGTAGAAGAGATGACTTAGAATCCCTTGGT TATGTGCTCATGTATTTCCTGAGGGGAAGCCTTCCTTGGCAGGGTCTCAAAGCAGGAACCAAAAAGCAGAAGTACGACCAAATCAGTGAAAAGAAGATGC TAACTCCTATTGAGGTTCTTTGCAAGTCATATCCGTCAGAGTTCACTTCATACTTCCATTATTGTAGATCCTTACGGTTTGAAGACAAGCCCGATTATGC ATATTTAAAAAGGCTGTACCGTGACCTTTTCGTGCGCGAAGGCTATCAGTTTGATTACATATTTGACTGGACTATATTGAAGTATCCACAGATAGGCTCC ACTTCAAGGCATCGGACCGGTGTAAAATCAGGAACGAAACCACAAACAACTGGTGAAAAGCATTCAGAGACTCATAAAAGATCGTCTCCGGGTGCAGATG CTTTAGGCAGAAGGAGTAGTACCCCCGGTACCGGACATCGTGAGAGACCAAAACACAGGCAGGCAGAAGATGGATCATCTTCCAAGGACAATCGATCTGA TGTAGAAAAAAGCAGCAGTCGGCCATCTTCTTCCCGAAATGCATCGAAGCGAGCAGTTGCTTCGTCGAGCAGGCTAAGCTCATCAAATGTAGGGAGCGAC GGTCGATCGAGCTGGCTCTTCTCCAACAACAGCAGCCGTCTCTCGACTACTCACAGAATCCATTCCGGGTCTGATACCAAAGGGAGTGGTGCATCGGGGT CCCACCACCGTGGCGTGTCTGCTCGAGACGATCAGCTTCGTAGCAGCTTCGAGAACCTTGCCATTGACGCAGAGAGGAGACAATGA
AA sequence Show only first row Show all	>Lus10014661 pacid=23165589 polypeptide=Lus10014661 locus=Lus10014661.g ID=Lus10014661.BGIv1.0 annot-version=v1.0 MDHLVGGKFKLGRKIGSGSFGELYIAVNVQTGEEVGVKLEPVKTKHPQLQYESKIYMILQGGTGIPELKWYGAEGDYNVMAIDLLGPSLEDLFNYCNRKF SLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHMGVEQSRRDDLESLG YVLMYFLRGSLPWQGLKAGTKKQKYDQISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYAYLKRLYRDLFVREGYQFDYIFDWTILKYPQIGS TSRHRTGVKSGTKPQTTGEKHSETHKRSSPGADALGRRSSTPGTGHRERPKHRQAEDGSSSKDNRSDVEKSSSRPSSSRNASKRAVASSSRLSSSNVGSD GRSSWLFSNNSSRLSTTHRIHSGSDTKGSGASGSHHRGVSARDDQLRSSFENLAIDAERRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	0	1
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	2.4	0.7752
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	6.0	0.7757
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	14.3	0.7643
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10033072 [exp]	14.7	0.7775
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	15.5	0.7044
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	18.7	0.7152
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	21.2	0.7401
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	21.4	0.7300
					Lus10028745 [exp]	22.4	0.6774
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	22.9	0.6776

Compare expression of checked genes

Lus10014661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.