Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03190 1402 / 0 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT1G20720 180 / 9e-47 RAD3-like DNA-binding helicase protein (.1) AT1G79950 175 / 3e-45 RAD3-like DNA-binding helicase protein (.1) AT1G79890 125 / 2e-29 RAD3-like DNA-binding helicase protein (.1) AT1G20750 93 / 5e-19 RAD3-like DNA-binding helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000652 [exp] 621 / 0 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10011460 [exp] 184 / 5e-48 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011447 [exp] 167 / 9e-43 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 152 / 1e-37 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 149 / 1e-36 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037532 [exp] 129 / 2e-30 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037548 [exp] 87 / 4e-17 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054000 [exp] 1442 / 0 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Potri.001G180200 [exp] 184 / 5e-48 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G182600 [exp] 157 / 1e-39 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G008700 [exp] 124 / 1e-28 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06777 [flax] [poplar] HBB Helical and beta-bridge domain CL0023 [flax] [poplar] P-loop_NTPase PF06733 [flax] [poplar] DEAD_2 DEAD_2
Representative CDS sequence Show only first row Show all	>Lus10014662 pacid=23165644 polypeptide=Lus10014662 locus=Lus10014662.g ID=Lus10014662.BGIv1.0 annot-version=v1.0 ATGAAGTTTCAAATCGAGGACGTCACGGTGTACTTCCCGTACGACAACATATACCCAGAGCAGTACTCGTACATGTTGGAGCTGAAGCGAGCCCTAGACG CGAAGGGCCATTGCCTTTTGGAAATGCCTACTGGGACGGGGAAGACTATATCGCTTCTTTCCTTAATCACCAGCTACGTCCTGGCTAAGCCCGAGAGTCC AATGAAATTAATTTACTGCACCAGGACGGTGCACGAGATGGAGAAAACTCTAGCTGAATTGAAACTGTTGCATAACTATCAGGTTAAGCATCTAGGTCCC GCTGCAAGGATCTTGGCTATCGGATTGTCGTCAAGGAAGAATCTTTGCGTGAATCCAAGGGTTGTGGCGGCTGAGAATCGGGATTCCGTCGATGCTGCTT GTAGGAAGCTGACTGCTAGTTGGGTTAGGGCAATGGCTACTGATAACCCCAGTGTGCCTACCTGTGAGTTCTTCGAGAGATATGAGAAGGCCGGGAGTAA CGCCGTTTTGCCCCCTGGAGTCTACACACTAGAGGATCTAAGAGCATTCGGGAAAGAGAATGGTTGGTGTCCGTACTTCTTGGCAAGACATATGGTGCAG TTTGCAAACGTTGTGGTTTATAGCTACCAGTACCTGCTTGATCCAAAGGTGGCGGGGATTATATCTAAAGAAATGCAAAAGGAGTCTGTCGTTGTGTTTG ATGAGGCACATAACATCGACAATGTCTGCATTGAAGCACTTAGTGTTAGTGTGAGAAGACAGACTCTTGAAGGAGCTGTTAGAAATCTTGCTAGAATAGA GAACGAGATTGACAGGTTCAAGGCCACTGATGAAGGTAGGTTGCGTGCCGAGTACAACCGGCTTGTCGAGGGTTTGGCACTAAGAGGAGACCTACCTGCC TCCGATGCCTGGCTTGCCAATCCTGCATTGCCTGATGATATTCTCCGGCAAGCAGTTCCAGGAAATATTCGTAGAGCAGAGCATTTTCTGCATGTGCTGC GTAGATTGGTCCAATATCTGAAAGGACGGCTGGATACTGATAATGTTGAAAAAGAAAGTCCTGTTAGCTTTGTGGCCTCTATCCATTCCCATGCTGGGAT TGATCAGAAAGCACTGAAATTTTGCTATGACCGCTTACATTCACTGTTAATGGCATTAGAAATAACAGACACTGATGATTTCCTCCACATCCAAACAATA TGCGACTTTGCAACACTTGTGGGGACATATGCTCGTGGATTTTCCATCATAATTGAACCTTTTGATGAGAGGATGCCACATATTCCTGATCCTGTATTGC AGCTTAGCTGCCATGATGCTTCACTTGCAATCAAACCTGTATTTGACAGGTTCCAGTCAGTAGTGATAACTTCTGGAACTCTTAGCCCAATCGATTTATA CCCTCGCCTCCTCAACTTCCATCCAGTTGTCAGCCGTAGCTTCAAAATGTCTTTGACAAGGGATTGCATCTGCCCGATGGTTCTAACTCGTGGGAGTGAT CAACTTCCAGTAAGCACTAAATTTGATATGAGAAGTGATCCGGGTGTGGTGAGGAACTATGGCAAGCTCTTGGTGGAGATGGTCTCAGTTGTTCCAGATG GAGTTGTTTGTTTCTTCGTCAGCTATTCATATATGGATGGAATAATCAACAGCTGGAATGAGAGTGGAATCTTAAAGGACATAATGCAACACAAGCTCGT CTTTATTGAGACACAGGATGTCGTCGAAACCACATTAGCTCTTGACAACTACCGTAGAGCTTGTGATTGTGGCCGAGGTGCTGTCTTCTTCTCAGTTGCC AGGGGAAAAGTAGCTGAAGGAATAGATTTTGATCGACATTATGGCAGATTAGTTATCATGTTTGGTGTTCCTTTTCAGTACACATTGAGCAAAATATTAC TTGCACGGCTGGAGTATCTAAGGGATACATTTCAAATAAAGGAAGGTGATTTCCTGACATTCGATGCCCTGAGACAAGCTGCACAATGTGTTGGCCGTGT GATCCGATCAAAAGCTGATTATGGAATGATGATTTTCGCTGACAAAAGATACAGTCGTCATGACAAGCGGTCTAAGCTGCCCAGTTGGATACTATCCCAT CTACGCGATGCCAACCTTAACTTAAGCACGGACATGGCTTTGCACATAGCTCGTGAGTTTCTTCGGAAGATGGCTCAACCATATGATAAGACCGGTGCAA GTGGGCGGAAAACACTGCTGTCGCAGGAGGATATAGAAAGGCTGGGTGAGAGAGGCGTGCAGGATATGGTGTATTAA
AA sequence Show only first row Show all	>Lus10014662 pacid=23165644 polypeptide=Lus10014662 locus=Lus10014662.g ID=Lus10014662.BGIv1.0 annot-version=v1.0 MKFQIEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTISLLSLITSYVLAKPESPMKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGP AARILAIGLSSRKNLCVNPRVVAAENRDSVDAACRKLTASWVRAMATDNPSVPTCEFFERYEKAGSNAVLPPGVYTLEDLRAFGKENGWCPYFLARHMVQ FANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGAVRNLARIENEIDRFKATDEGRLRAEYNRLVEGLALRGDLPA SDAWLANPALPDDILRQAVPGNIRRAEHFLHVLRRLVQYLKGRLDTDNVEKESPVSFVASIHSHAGIDQKALKFCYDRLHSLLMALEITDTDDFLHIQTI CDFATLVGTYARGFSIIIEPFDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSD QLPVSTKFDMRSDPGVVRNYGKLLVEMVSVVPDGVVCFFVSYSYMDGIINSWNESGILKDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSH LRDANLNLSTDMALHIAREFLRKMAQPYDKTGASGRKTLLSQEDIERLGERGVQDMVY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10014662 [exp]	0	1
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	5.3	0.8809
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	7.5	0.8794
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	8.5	0.8752
AT5G51220			ubiquinol-cytochrome C chapero...		Lus10042991 [exp]	9.7	0.8288
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	10.1	0.8574
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	10.6	0.8529
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	11.0	0.8690
AT1G42440			unknown protein		Lus10013232 [exp]	11.7	0.8705
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	12.8	0.8146
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	13.3	0.8429

Compare expression of checked genes

Lus10014662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.