Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31530 684 / 0 EMB2289, SCY2 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1) AT1G03180 239 / 3e-73 unknown protein AT2G18710 112 / 9e-26 SCY1 SECY homolog 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000653 [exp] 637 / 0 AT2G31530 371 / 8e-125 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1) Lus10000654 [exp] 452 / 8e-152 AT1G03180 287 / 1e-94 unknown protein Lus10023202 [exp] 112 / 1e-25 AT2G18710 849 / 0.0 SECY homolog 1 (.1) Lus10008901 [exp] 61 / 3e-09 AT2G18710 382 / 1e-127 SECY homolog 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G053900 [exp] 778 / 0 AT2G31530 789 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1) Potri.005G208700 [exp] 315 / 7e-102 AT1G03180 290 / 7e-99 unknown protein Potri.002G053801 [exp] 194 / 5e-58 AT1G03180 142 / 6e-43 unknown protein Potri.006G175300 [exp] 122 / 4e-29 AT2G18710 739 / 0.0 SECY homolog 1 (.1) Potri.018G097500 [exp] 112 / 7e-26 AT2G18710 781 / 0.0 SECY homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [flax] [poplar] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Lus10014663 pacid=23165572 polypeptide=Lus10014663 locus=Lus10014663.g ID=Lus10014663.BGIv1.0 annot-version=v1.0 ATGGAGGCGACTCTCCGGTTCACTCCACAGCTCTTCGGAAGCAGGCCAGTCCAGTTTCGAGGTAAACTTGGGAAACAGAATCTCCGGTTATGCTGCGTCT CGAAATTCCAGGTTCCCCGCAAGATGTGTGCGGTGGACTCTGCACGCCCTTTATTAACTGCGTCTAGACCCATTTTATTAAGCTCGAACCGGAATATCTC AGTGAATTCTGCTGATAAACTTCAAAGTGACTATGTGAATGTTGAAGCTAAGTCTGTAGATGAAGGTGTACCACCAAGACTAAATAGTGGAGACTCTCAT CCTGGTTCAAGTAATGGTGTAGCAACTGTGAAGCCCCAAGTTAAGATGTTTCGGAATAGATTTCTGAATTTTTTGCGAATGAGTTCTGTACTCAACGATG CTGCAGAGTCATTTTTTAAGAGTGAGATACGGCGACGATTGTTCGTCACAGCTGTCCTTATTGTGGTCAGTCGTGTTGGATATTATATTCCCTTGCCTGG CTTTGATAGAAGGCTGATACCTCGAGATTACCTTAGTTTTGTCTCCGGATCTGTTGGTGAGTACTTCTGGTTTGCAGTTTGCTTGGATGTAGGCTGCACT AGCTTATATGAACTCGGAGACTTGACAGCAGAGCTTAAATTGTCGTTCTTTCAGCTTGGAATCAGTCCACAGATATTAGCATCAATTCTTATGCAGGTTC TCTGTCATGTTGTTCCCTCGCTCATAAAGATGCGGAAGGAAGGCTTGGATGGCACTGAAAAGATTAAAAGATATATATGGTGGGGTTCACTCGGGTTTGC TACTGTGGAAGCAATAGTGATTGCTTGTTATTCACTTCCCTACTCCGTATATGCAGCTAGTTACAGGTTCAAACATGTAATGCTGACATCTTTTCTTTTG GTCTGTGGTGCGATGACTGTGACGTGGATCTGTGATACTATAACGGAATCTGGATTTGGTCAAGGGTCATCTTTAATCATATGTGTGGGAATTTTGACGG GCTACACTGATACGCTACACAAGATGTTGACTCAACTCTCAGGTAGTGCCCGCACTTGGTGGCCATATGGTCTTGGGCTGTTGGGCATTTTTACTGTAGT CACTATGTGGGCAGTTGTCGTTACCGAGGGTTGTAGGAAAATAAAGCTGCAGTATTATGGTTTCAAACTCGCGTCAGCTGCAAGAGAAGATTCTCCGGTT ACAGAAGTCGAGCCTTACATCTTATTTAATATTAATCCGTCAGGAATGCAGCCTCTTCTCACGACAACTTATCTCTTAGCGATTCCCAGTATAATAGCAG GTGTCTTCGGTTCACCTTTATGGGAGCATATTAGAGAGATACTGAACCCTCAAAGCTCAATCGGTGCTGAGCCTTGGGTTTACTACACAATTTATGCATT CTTCGTTTTTGTGTTCAACATATTTGACATTGCAAACTTACCAAAGGAGATTGCAGACTACTTAAATAAGATGGGTGCCAGGATACCAAATATAAAGCCT GGGAAAGCTACGATTGAGTACCTAACGAAGATTCAGGCATCTACACGTTTTTGGGGAGGTCTTTTGTTGAGCATATTGGCAACGTCGTCAAGCATACTTG ATCGTTATCTACGCAGCATAAATGAGGGATTTGCTATCGGTATTTTGCAGGACCTTAGTGCTGAGTACGATAATCTACAGACGGAGTGTAAGGATTTGGA GACTGCACTTTCACTGTGTGAAGCAAAGGGTTCCTTCAGAAGACAACAGTCAGGCCGAATGCGAGAAATCAAGCGGGGAATTAAAAAGCTTCAGAAGTTG ATGAATACAGTTGGTGGTCTTGAGACTGCATTACAATTGATAATTAGTGAGGTTCCTGGAATGGAGAGCGTGATTTTGATCCTTGGATCCAGTCCTATAC GGCCTTATCATGTATACGAGTTCTGTTTCGCACATGGAAATGCAGTGGCCGCGGATTCCAGTGATTTTACCAGAAATAAAGTAGTAGAAGGGCTTGCAAG AAAGGCTATTCGAGCATTGGTCACCAAAGGTGCTGGATCTGGCACTTACCCAGGCCCTACAAAGTTGTTTCTACTGGTAAAAGCTCCATCTTCTTTCAAT TTGCCTCTTCATTTTCTGCCGAAACGTGACTTCAAATATAGCAAAAAGGTTGTACCTTTCAGAGTGCAATTCAAGTGTAGAAGTCAAGGTCTCTCACCAG TTGACCAGAACTATGCTACTAACAAGTCTAACGGTACAGGAGATTCAGCATCGAACGATTTAATCTGGTTTCAGTGCCGCCATGTTCTAAAGGGCCTTGC ATTCAAGATTCCAGACGAGGAATAA
AA sequence Show only first row Show all	>Lus10014663 pacid=23165572 polypeptide=Lus10014663 locus=Lus10014663.g ID=Lus10014663.BGIv1.0 annot-version=v1.0 MEATLRFTPQLFGSRPVQFRGKLGKQNLRLCCVSKFQVPRKMCAVDSARPLLTASRPILLSSNRNISVNSADKLQSDYVNVEAKSVDEGVPPRLNSGDSH PGSSNGVATVKPQVKMFRNRFLNFLRMSSVLNDAAESFFKSEIRRRLFVTAVLIVVSRVGYYIPLPGFDRRLIPRDYLSFVSGSVGEYFWFAVCLDVGCT SLYELGDLTAELKLSFFQLGISPQILASILMQVLCHVVPSLIKMRKEGLDGTEKIKRYIWWGSLGFATVEAIVIACYSLPYSVYAASYRFKHVMLTSFLL VCGAMTVTWICDTITESGFGQGSSLIICVGILTGYTDTLHKMLTQLSGSARTWWPYGLGLLGIFTVVTMWAVVVTEGCRKIKLQYYGFKLASAAREDSPV TEVEPYILFNINPSGMQPLLTTTYLLAIPSIIAGVFGSPLWEHIREILNPQSSIGAEPWVYYTIYAFFVFVFNIFDIANLPKEIADYLNKMGARIPNIKP GKATIEYLTKIQASTRFWGGLLLSILATSSSILDRYLRSINEGFAIGILQDLSAEYDNLQTECKDLETALSLCEAKGSFRRQQSGRMREIKRGIKKLQKL MNTVGGLETALQLIISEVPGMESVILILGSSPIRPYHVYEFCFAHGNAVAADSSDFTRNKVVEGLARKAIRALVTKGAGSGTYPGPTKLFLLVKAPSSFN LPLHFLPKRDFKYSKKVVPFRVQFKCRSQGLSPVDQNYATNKSNGTGDSASNDLIWFQCRHVLKGLAFKIPDEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	0	1
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	3.2	0.8919
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10013176 [exp]	5.1	0.8655
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	5.5	0.8773
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10042033 [exp]	6.3	0.8692
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10022181 [exp]	6.3	0.8885
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10003036 [exp]	7.2	0.8531
AT1G73970			unknown protein		Lus10036972 [exp]	7.5	0.8654
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	9.3	0.8880
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10016045 [exp]	11.8	0.8519
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	13.3	0.8691

Compare expression of checked genes

Lus10014663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.