Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02830 57 / 7e-10 unknown protein AT3G54000 49 / 9e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042573 [exp] 81 / 1e-18 AT4G02830 66 / 2e-13 unknown protein Lus10021105 [exp] 51 / 3e-07 AT3G54000 90 / 8e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208800 [exp] 81 / 1e-18 AT4G02830 99 / 4e-26 unknown protein Potri.002G053700 [exp] 71 / 7e-15 AT4G02830 99 / 4e-26 unknown protein Potri.016G105000 [exp] 57 / 2e-09 AT3G54000 73 / 4e-14 unknown protein Potri.010G195800 [exp] 54 / 2e-08 AT3G54000 94 / 3e-21 unknown protein Potri.006G093000 [exp] 52 / 1e-07 AT3G54000 79 / 9e-16 unknown protein Potri.008G062200 [exp] 51 / 1e-07 AT2G39870 90 / 9e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014664 pacid=23165581 polypeptide=Lus10014664 locus=Lus10014664.g ID=Lus10014664.BGIv1.0 annot-version=v1.0 ATGGCGGCTGGAAGAGACGATCAACAACATCGGTGCCTTCCTAGTTCCCATGTTCTGTACCATACGATGATTCGCTACTCGGTGTCGAATCGGAGAGTAC TTGGGAAGCAAGATCAGAAGAACAAGTGCAGCAGGAATTATAATCAGCATGGTATTCAACAGCAGCTGCAGTATTATAATAAGAGTAGCTCATCGTCTAG TATTATGAATAAGTTGCATCCTCAAGACACATCACTCCAACTGCCAAAATCTAGCAATTCAAGATGCCCTACTTCCAATCGGGTGGTGAGATCACATAGA AGAGGAATGCGGCCGATTTTCGTCCTCGATCATGGGAAGAAGCCATGCGCGGGCACTGGCGTCTTCTTTCCGAGAAACGTCAGTGCCACGAGCTCATCAC CCGACAAAAGTTCAACAATCTGTTCACCTGTTCTCCTTCCAGCAAGAGTTGTTCCAGCATTTAATCTCAATGTCAGTGAGTTAGGGCTGCGATTCTCTCG GTGTGAATTAGTACCTGCAGATTCTAAAAATAGCTCCAAACCTGGAAACAGAGATACTCTGGCAGCAGCGAATTGCACAAGCGCCGTTGAGGACTCGCAG GATGAAAATGTTTCACCGGAATTACTTCTCCCAAAAGAATGGACTTATTAG
AA sequence Show only first row Show all	>Lus10014664 pacid=23165581 polypeptide=Lus10014664 locus=Lus10014664.g ID=Lus10014664.BGIv1.0 annot-version=v1.0 MAAGRDDQQHRCLPSSHVLYHTMIRYSVSNRRVLGKQDQKNKCSRNYNQHGIQQQLQYYNKSSSSSSIMNKLHPQDTSLQLPKSSNSRCPTSNRVVRSHR RGMRPIFVLDHGKKPCAGTGVFFPRNVSATSSSPDKSSTICSPVLLPARVVPAFNLNVSELGLRFSRCELVPADSKNSSKPGNRDTLAAANCTSAVEDSQ DENVSPELLLPKEWTY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02830			unknown protein		Lus10014664 [exp]	0	1
AT2G14830			Regulator of Vps4 activity in ...		Lus10033703 [exp]	2.0	0.9558
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	2.2	0.9570
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041195 [exp]	3.6	0.9371
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	3.9	0.9538
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10006405 [exp]	4.5	0.9410
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	8.7	0.9513
					Lus10031407 [exp]	11.2	0.9366
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10012804 [exp]	11.6	0.9206
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	12.5	0.9467
AT3G14470			NB-ARC domain-containing disea...		Lus10016316 [exp]	16.9	0.9303

Compare expression of checked genes

Lus10014664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.