Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19260 72 / 2e-14 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT1G03170 64 / 9e-12 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT4G02810 61 / 2e-10 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT3G06020 51 / 3e-07 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1) AT5G22090 50 / 1e-06 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT1G54740 46 / 9e-06 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000655 [exp] 337 / 3e-117 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 157 / 1e-46 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 153 / 3e-45 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 80 / 2e-17 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 74 / 4e-15 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 68 / 7e-13 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 59 / 1e-09 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10021930 [exp] 55 / 4e-09 AT5G19260 68 / 5e-14 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10013353 [exp] 50 / 7e-07 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209100 [exp] 125 / 6e-34 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 107 / 2e-27 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.008G149600 [exp] 90 / 9e-21 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 89 / 2e-20 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 68 / 1e-12 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 58 / 3e-09 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10014665 pacid=23165622 polypeptide=Lus10014665 locus=Lus10014665.g ID=Lus10014665.BGIv1.0 annot-version=v1.0 ATGTCCTCCGCCGCATCCACAAGTTGTTATCATCAGGAGGGCCTCCAATCCAGCCAGCTGGTGTCGGAGCCACGAGTCTTGAGGCTTCGTTTCGCCGCCG CCCCACCACCAACAGACACAAACATTATCCCTTATTGCTCCTCCTCCGACCACAATGTCGCCGGAGGCGGATTGAGCTTCCTCCAATGCATCACTACTAC AACCAAAGAAAATGGATACGACGATGAACGACAAACCCACAACCGAAAGTCGGCGGCTTTAAGCAAACAGAGCCTTGAAATGTGCACTGAGAGCCTGGGA AGTGAGACGGGAAGCGACGACCCCTGCAGCATCGACGACGATCAGTTGATGCTGCAGAAGAGCTACCGCGCCGATGACGGATTCCGGCAGCAGCAGCAGC AGGTGGAGGAGGAGGAAGAGGAGAAGATTAATCCTATTAGTACTAGTACTGATACTTGTGCTAGTATGAGAAACAGAATGCAGAGGAGGAGAAGAAGTGG GAGGAGATTACAACAATTCCCACCTCCCCTGTCTTCAAGTGGGGTCGAAATGAGGTCTCACCGGGAAGACGGAAGGCTGGTGTTGACGGCGGTGGAAGCG TCGTCCTGCCGTGCCAAGTTCCACGCGGAGAGAAGCAATGGCCGGCTGAGGCTTCATCTTACAACTACTGCTGATTATTATCCCACCCAAGAAGAAACAG AGGACCAGGACACGGTGAGAGCAGAGGATGAGAAAACAGAGCATGAATTGGTGATGCCGAGAGGGAGGTGTAAGGAAACAGGGGAGGTAAACAGAGGATT ATTGCAGAATTGGGAGCCATTTTGGGTGTCTACTTAA
AA sequence Show only first row Show all	>Lus10014665 pacid=23165622 polypeptide=Lus10014665 locus=Lus10014665.g ID=Lus10014665.BGIv1.0 annot-version=v1.0 MSSAASTSCYHQEGLQSSQLVSEPRVLRLRFAAAPPPTDTNIIPYCSSSDHNVAGGGLSFLQCITTTTKENGYDDERQTHNRKSAALSKQSLEMCTESLG SETGSDDPCSIDDDQLMLQKSYRADDGFRQQQQQVEEEEEEKINPISTSTDTCASMRNRMQRRRRSGRRLQQFPPPLSSSGVEMRSHREDGRLVLTAVEA SSCRAKFHAERSNGRLRLHLTTTADYYPTQEETEDQDTVRAEDEKTEHELVMPRGRCKETGEVNRGLLQNWEPFWVST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	0	1
AT4G20160			unknown protein		Lus10036249 [exp]	1.0	0.9383
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10031628 [exp]	1.4	0.9353
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	1.7	0.9284
AT5G28150			Plant protein of unknown funct...		Lus10001787 [exp]	2.4	0.9080
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	2.6	0.9074
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	4.5	0.9010
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	4.9	0.9281
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10027336 [exp]	7.9	0.8785
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	9.5	0.9149
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	12.0	0.8837

Compare expression of checked genes

Lus10014665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.