Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03160 944 / 0 FZL FZO-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000656 [exp] 1587 / 0 AT1G03160 1021 / 0.0 FZO-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209200 [exp] 1102 / 0 AT1G03160 994 / 0.0 FZO-like (.1.2) Potri.002G053332 [exp] 285 / 4e-89 AT1G03160 278 / 2e-88 FZO-like (.1.2) Potri.002G053366 [exp] 176 / 2e-50 AT1G03160 195 / 7e-58 FZO-like (.1.2) Potri.004G230600 [exp] 44 / 0.0008 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10014666 pacid=23165628 polypeptide=Lus10014666 locus=Lus10014666.g ID=Lus10014666.BGIv1.0 annot-version=v1.0 ATGATACCTCTTCTCTCCCTCCACACTCCTCCTCCGCCTCCTCCGCTCTTCCTCTTCTCTCCTTCCCCTTCCTTCATCCCTTTACTCCCTCGTTTCAGGT CCTCTTCTCCCCTTCTCCCTGCGCATCACCTAGCAGTTCACTCCCTCCCGAAAAATTCCTCATCTCAATTCTCCGCTGACCAGACGCAGCAGCCGAGGAC TCTATTCCCCGGCGGATACAAGCGTCCGGAAATCAAGGTCCCGAGCATTGTGCTCCAGCTCCGGCCGGATGAGGTTCTTAACGGCGGAGACGATGCCTTG GATCTGATTGACAGAGCCGTATCTCGTTGGGCTGGAATCGTCGTGCTTAATGGCGACGACGGAAGTGGGAAGTCGCTCTACGAAGCCGCGTGTCTGTTGA AGTCTGTCGTTAAGGATCGTGCCTATCTGTTGATTGCCGAGCGCGTCGATATTGCTTCCGCCGTTAACGCTAGCGGAGTCGTCGTTTCCGATCAAGGTCT TCCCGCCATTGTTGCGAGAAGCATGATGATGGAGTCCAAGTCCGAATCGGTCCTTCTTCCTTTGGTTGCTAAGATCGTTGAAACTCCAAAGTCTGCCGTT GACGGGGCTAGTTCCGAAGGAGCGGATTTTCTCATTCTGTCATCTGGTAGTGAAGATACTTTCGATTCGGAATTCGACTCAGGGTTTCAGAATGTGAAGA TTCCAATCTTTGTTGGTTATGCTCTGAACGAGGAGGTTGCGCCACCAATGATCAAATTTCGTCCAAGTGGTTATGTTATGTCACTGGAAGATTTGAGGCT GGTTAGTGATGATTCTTTGAGCCAGCTATTTCAACCAGTGAGCAAATTGGAACAGAAAACTCAAAATGAAGTCGCAGAACTCAATACGTACAAGGGGTTG AATTTAGAAAATGATGTTAATGGGAAAGATACCATGGCAGGGTTTGTTAGAGTGGAAGATAAAGGAAAACGACTCATTGAGAAAGAGAAATCAGTGTTGC TTGAAGCTATTGACATTATGAAGAAAGCTGTCCCTATGATGAAGGAGATCTCACTTCTAGTTGATGCAGTTTCTCAAATTGATGAGCCATTTTTACTGGC CATAGTGGGTGAATTTAACTCTGGAAAGTCAAGTGTGATTAATGCACTACTTGGGAAAAAATATCTGAAAGAAGGTGTTATCCCTACAACAAATGAGATT ACCTTTCTTTGCTATTCTTCATTTGATGCCGAAGAGCAACAGCGGTGTGAAAGGCATCCAGATGGCCAATTTATTTGCTATCTTCCAGCCCCAATTCTTA AAGAAATGAACATTGTTGACACGCCAGGAACCAATGTCATTCTCCAAAGGCAGCAACGCCTAACCGAGGAATTTGTGCCTCGTGCAGATTTGCTTCTATT TGTAATTTCAGCTGACCGGCCATTGACCGAAAGTGAGGTTACTTTTCTACGTTATACTCAGCAGTGGAAGAAGAAGATTGTGTTTGTGTTGAACAAGTCT GATCTATACCGGAATGACAGTGAACTTGAGGAGGCTTTGTCTTTTATCAAAGAGAATACCAGGAAGTTGTTAAATTCAGAAAGTGTGACAGTCTACCCTG TATCTGCTCGGTCTGCACTTGAAGCAAAATTGTCAACTTTGGATCTTTCCAGTATCCATACAGAGTCTCATTGGAGAACTGGGAAATTCTATGAGCTTGA GAAGTTCTTGTATAGCTTTTTAGATGGCACAACAACGAATGGCATGGAAAGAATGAGGCTCAAACTTGAAACTCCAATACGAATTGCCGAACGATTGCTC TCTGCTTCTGATACTGCTGTAAAACAAGACTGCAGACTTGCCAAGCAGGACGTGGCATATGCAGCTGAAATAGTTGAAAGTCTGAAAGATTACACCACAA AGATGGAAAACGAGAGCATCTCTTGGAGAAGAAAAGCTCTGTCACTGATTGATGCAACCAAAATCCGCGTTCTGGACCTGATAGAATCGACACTGCAGAT ATCAAATCTTGATCTTGTTGCTTCATATGTTTTTAAAGAGAAGTCTGAGATGCCATCAAGTTTAAAGATTCAAAATGAAATAATGTCTCCCGCACTCTCT GATGCTCAAGAACTCCTTGAAGAGTATCGGACATGGTTGAGATCGAACAGTTTCCGCAAGGCAAAACTGTGTAGGGAATCTTTTGACAAAAGGTGGCCTT TGATTATTGACCGGAATACTCAGATGCAGTTGGATGCGGCAGAGTCGCTGAAGATAATGAACGAGTCTAGCTCAGAAGTGCTAGAGAACTTAAGCGCCGT CAGTGCTTCCAAGTTATTCCAACAAGAAATACGTGAATCGTTCGTGAGTACGTTTGGTGGCGTTGGAGCTGCTGGCTTGCTGGCGTCTCTTTTGACATCA GTGCTGCCTACTACTCTCGAAGATCTTCTCGCACTTGGATTTTGTTCTGCTGGAGGGTACATTGCAATTCTGAACTTCCCCGCTCGGAGAAAGGCGATGA TGGACAAGGTAAACACAATTGCAGATGGATTGGCGCTGGAAGTAGAAGAAGCGATGCAGAAGGATCTAACGGAAACACTTGGTAATTTAGACACCTTTGT AAAAACCATAGGTAAGCCGTACCAAGATGCAGCACAAGAAAAGTTAGACAGGCTTCTTGCGGTACAGATGGAAGTCTCCGATGTAGACGAGAAGGTTAGA AGGCTGCAAGTAGAAATTCAGAACCTTCATGTATCAAACATCATTTGA
AA sequence Show only first row Show all	>Lus10014666 pacid=23165628 polypeptide=Lus10014666 locus=Lus10014666.g ID=Lus10014666.BGIv1.0 annot-version=v1.0 MIPLLSLHTPPPPPPLFLFSPSPSFIPLLPRFRSSSPLLPAHHLAVHSLPKNSSSQFSADQTQQPRTLFPGGYKRPEIKVPSIVLQLRPDEVLNGGDDAL DLIDRAVSRWAGIVVLNGDDGSGKSLYEAACLLKSVVKDRAYLLIAERVDIASAVNASGVVVSDQGLPAIVARSMMMESKSESVLLPLVAKIVETPKSAV DGASSEGADFLILSSGSEDTFDSEFDSGFQNVKIPIFVGYALNEEVAPPMIKFRPSGYVMSLEDLRLVSDDSLSQLFQPVSKLEQKTQNEVAELNTYKGL NLENDVNGKDTMAGFVRVEDKGKRLIEKEKSVLLEAIDIMKKAVPMMKEISLLVDAVSQIDEPFLLAIVGEFNSGKSSVINALLGKKYLKEGVIPTTNEI TFLCYSSFDAEEQQRCERHPDGQFICYLPAPILKEMNIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTESEVTFLRYTQQWKKKIVFVLNKS DLYRNDSELEEALSFIKENTRKLLNSESVTVYPVSARSALEAKLSTLDLSSIHTESHWRTGKFYELEKFLYSFLDGTTTNGMERMRLKLETPIRIAERLL SASDTAVKQDCRLAKQDVAYAAEIVESLKDYTTKMENESISWRRKALSLIDATKIRVLDLIESTLQISNLDLVASYVFKEKSEMPSSLKIQNEIMSPALS DAQELLEEYRTWLRSNSFRKAKLCRESFDKRWPLIIDRNTQMQLDAAESLKIMNESSSEVLENLSAVSASKLFQQEIRESFVSTFGGVGAAGLLASLLTS VLPTTLEDLLALGFCSAGGYIAILNFPARRKAMMDKVNTIADGLALEVEEAMQKDLTETLGNLDTFVKTIGKPYQDAAQEKLDRLLAVQMEVSDVDEKVR RLQVEIQNLHVSNII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	0	1
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	1.0	0.9766
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	2.8	0.9386
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	2.8	0.9312
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10000221 [exp]	2.8	0.9540
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	3.0	0.9539
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	3.5	0.9294
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	5.5	0.9382
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10021576 [exp]	6.0	0.9356
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	6.9	0.9276
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	7.0	0.9328

Compare expression of checked genes

Lus10014666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.