Plant FIBer expression Database

Lus10014667 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000657
[exp]
357 / 5e-126 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G053200
[exp]
64 / 1e-11 ND /
Potri.005G209300
[exp]
46 / 9e-06 ND /
PFAM info
Representative CDS sequence
>Lus10014667 pacid=23165583 polypeptide=Lus10014667 locus=Lus10014667.g ID=Lus10014667.BGIv1.0 annot-version=v1.0
ATGGCTAGGAAACGCAGCAGCACTTCAGCTTCTCAGCTTGAAGAAGTGGTCACTCCTCCCTCCCTGGCTAAGAATTCCAGGCAGCCAGGGGCTGAAACCA
ACTACTCCTCTACTGAACTTTCCCCAGCAGCTGTCAAGACGACTCCTTGGAAGAAGGCTAAGAGTAGCCATGAGGCAACCCCCAGGACAACTTCTTTGAA
GAATGCTAAGAGAACACCTAGTGGAGCTGGAAATAGGCGCTCTAGTCGCCTACATACTGTAGGCGTAACTACTTCAAATACCACTGCCAACCAGGAAATC
AATCGCATAGTTGAGGATATAACCAGCACTGATAGTGAGAAGGAGGAACACGAGCAGCCGGTTGTGGAAGAAACACGGAAGGAGAAGGATCCTGTTCCTG
AGAGTGGTGAAACTGGGGAGAAGAGCAAGGAAGAACTTGCTAAACTTTGTGAGGAACAACAGAAGATCATGGCTGAACAACAGAAGAACATAGCTGAACT
GAAGGCTGAAATTGATTACCAGATGTCGAAGAATGCCTTTCCAAATGAAAGGCCCTCTGACCAGAGATACAAGAGCTTGTACATCGATTCCAAGAAGGAG
GTGGATGCCTTGACAAAGGAGACTCATCAGTTGCGAATGGATATCGAGTATGCTCGTGGTAGATCTGTTGGGCTTGGAGAAGCAATGGTCACCATGCTGG
TGGCGGTGGCACGGAGTGGATTCTTTGGACAACCACCCCAGTGA
AA sequence
>Lus10014667 pacid=23165583 polypeptide=Lus10014667 locus=Lus10014667.g ID=Lus10014667.BGIv1.0 annot-version=v1.0
MARKRSSTSASQLEEVVTPPSLAKNSRQPGAETNYSSTELSPAAVKTTPWKKAKSSHEATPRTTSLKNAKRTPSGAGNRRSSRLHTVGVTTSNTTANQEI
NRIVEDITSTDSEKEEHEQPVVEETRKEKDPVPESGETGEKSKEELAKLCEEQQKIMAEQQKNIAELKAEIDYQMSKNAFPNERPSDQRYKSLYIDSKKE
VDALTKETHQLRMDIEYARGRSVGLGEAMVTMLVAVARSGFFGQPPQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10014667
[exp]
0 1
Lus10000657
[exp]
1.4 0.8392
AT5G41010 NRPE12, NRPD12,... DNA directed RNA polymerase, 7... Lus10030353
[exp]
3.9 0.8152
AT2G03170 ASK14 SKP1-like 14 (.1) Lus10031171
[exp]
4.9 0.8474
AT3G46060 ARA3, Ara-3, At... RAB GTPase homolog 8A (.1.2.3) Lus10040856
[exp]
5.9 0.7373
AT1G54250 NRPE8A, NRPB8A,... RNA polymerase Rpb8 (.1) Lus10013760
[exp]
13.0 0.7779
AT5G13470 unknown protein Lus10005318
[exp]
13.3 0.7306
AT3G57930 unknown protein Lus10031233
[exp]
17.3 0.7138
AT2G47640 Small nuclear ribonucleoprotei... Lus10013840
[exp]
21.0 0.7714
AT3G07590 Small nuclear ribonucleoprotei... Lus10003727
[exp]
28.7 0.8057
AT2G02470 Alfin AL6 alfin-like 6 (.1.2) Lus10026269
[exp]
29.3 0.7950

Lus10014667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.