Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63130 684 / 0 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT5G19320 612 / 0 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G06000 162 / 9e-47 RNI-like superfamily protein (.1) AT1G10510 83 / 2e-16 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT1G47200 69 / 1e-13 WPP2 WPP domain protein 2 (.1) AT5G43070 65 / 3e-12 WPP1 WPP domain protein 1 (.1) AT5G27940 56 / 4e-09 WPP3 WPP domain protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006930 [exp] 949 / 0 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10034066 [exp] 611 / 0 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10010523 [exp] 608 / 0 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10030829 [exp] 87 / 7e-18 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030658 [exp] 87 / 1e-17 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10010235 [exp] 73 / 7e-15 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1) Lus10009747 [exp] 72 / 1e-14 AT1G47200 119 / 1e-34 WPP domain protein 2 (.1) Lus10042643 [exp] 59 / 6e-10 AT1G47200 125 / 4e-37 WPP domain protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209600 [exp] 751 / 0 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.002G052900 [exp] 750 / 0 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.010G091100 [exp] 669 / 0 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.008G193700 [exp] 83 / 1e-16 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.014G021900 [exp] 74 / 3e-15 AT1G47200 115 / 1e-32 WPP domain protein 2 (.1) Potri.002G122000 [exp] 68 / 3e-13 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10014670 pacid=23165631 polypeptide=Lus10014670 locus=Lus10014670.g ID=Lus10014670.BGIv1.0 annot-version=v1.0 ATGGACTGTCCAGCACCAGTTTTCCAGCCTCGCCAAGTTTCCTTGAAGATGTGGCCTCCAAGTCATAGTACAAGGTTAACACTCATTGAACGGATGACCA AGAATCTCACCACACCGTCCACAATTTCGAGAAAGTATGGTTTGTTGAGCAAAGAAGAAGCTGAGGAGGATGCCAAGAGAATAGAACAAGTGGCTTTTGA TGCTGCAAGCCAGCACTATGAGAAAGAGCCAGATGGCGATGGAAGCTCTGCTGTGTTACTGTATGCCAAGGAATCTAGCAAGTTGATGCTGGAGGTTCTT AAGCGCGGTCCTAAAGTAAAAGAGGAGGGAGAAGATATATCTGCTGAGCTAGATCAAATTCCACAAATTATTGTTTTTGATATCTCCGGTGGACGAAGGG CATTTATTGAAGCAACAGAAGCGGAGGATCTTCTGAGGCCGCTTACTGAACCAGGAAATTCGTTTACCAGGATATGTTTCAGCAACAGAAGTTTTGGATT GGATGCTGCCATGGTTGCAAAACTCATATTGTCATCCATTAAGGACCAGTTAACAGAAGTAGATTTATCTGATTTTGTTGCAGGAAGGCCAGAGGCTGAA GCTCTTCAAGTCATGAATGACTTCTCATCAGCTTTGGAAGGATGTAACTTGAGGTATCTGGACCTTTCAAACAATGCTCTCGGGGAAAAGGGCGTCAGGG CTTTTGCGGCACTCATCAAGTCCCAGCACAATTTAGAGGAGCTTTATTTGATTAATGATGGTATCTCTGAAGAAGCAGCACAAGCAGTTAATGAGTTACT TCCTTCAACCGAGAAACTGAGGGTCCTTCAATTTCACAACAACATGACTGGAGATGAAGGTGCTATAGCTATTGCCAAGATTGTGAAACGTTCTAACCTC TTGGAAGATTTTAGGTGTTCTTCAACAAGGGTAGGAGCAGAAGGTGGTGTTGCTTTAGCTGAAGCTCTTGAAACATGTACTCATATGAAGAAGCTTGATC TTCGTGACAACATGTTTGGTGTGGAAGCCGGACTTGCTTTGAGCAAAACTCTGTTGGCTTTCACCAATCTTACTGAGGTTTACCTCAATTATTTGAATCT GGAGGATGAGGGGGCAGAAGTTATTGCCAATGCTCTTAAAGACTCCGCACCTTCTCTTGAAGTTCTGGAAATGGCTGGTAATGACATTACTGTAAAAGGG GCTTCCACCTTGGCGGGATGCATCTTAGCTAAACAATTGCTGACCAAGCTAAACCTAGCTGAGAACGAGCTGAAGGATGAGGGTACTATCGTGATCGCCA AGGCTATAGAAGCTGGACATAACCAGTTGAATGAAGTTGATTTTAGCACTAATGCAATTAGAAGAGCCGGAGCAAGGGTATTGGCACAGGCTGTGGTGAG CAAACCTGGATTTAAGTTACTAAACTTGAATGGTAATTTCATATCTGATGAAGGGCTTGACGAAGTGAAAACTGTATTTAAGTATTTGCCTGATTTGCTC GGTCCATTGGATGAGAATGACCCTGAAGGTGAAGATTTTGACGAGGATGACAACAATGGCGATGGGGACGAGGATGAGCTAGAATCAAAACTCAAGGGTC TCGAGATCAAGCATGAGGATTGA
AA sequence Show only first row Show all	>Lus10014670 pacid=23165631 polypeptide=Lus10014670 locus=Lus10014670.g ID=Lus10014670.BGIv1.0 annot-version=v1.0 MDCPAPVFQPRQVSLKMWPPSHSTRLTLIERMTKNLTTPSTISRKYGLLSKEEAEEDAKRIEQVAFDAASQHYEKEPDGDGSSAVLLYAKESSKLMLEVL KRGPKVKEEGEDISAELDQIPQIIVFDISGGRRAFIEATEAEDLLRPLTEPGNSFTRICFSNRSFGLDAAMVAKLILSSIKDQLTEVDLSDFVAGRPEAE ALQVMNDFSSALEGCNLRYLDLSNNALGEKGVRAFAALIKSQHNLEELYLINDGISEEAAQAVNELLPSTEKLRVLQFHNNMTGDEGAIAIAKIVKRSNL LEDFRCSSTRVGAEGGVALAEALETCTHMKKLDLRDNMFGVEAGLALSKTLLAFTNLTEVYLNYLNLEDEGAEVIANALKDSAPSLEVLEMAGNDITVKG ASTLAGCILAKQLLTKLNLAENELKDEGTIVIAKAIEAGHNQLNEVDFSTNAIRRAGARVLAQAVVSKPGFKLLNLNGNFISDEGLDEVKTVFKYLPDLL GPLDENDPEGEDFDEDDNNGDGDEDELESKLKGLEIKHED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10014670 [exp]	0	1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10026482 [exp]	1.7	0.8915
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	11.8	0.8191
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038206 [exp]	25.7	0.8208
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	29.2	0.8281
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	29.2	0.7685
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042591 [exp]	30.0	0.8104
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10027874 [exp]	51.7	0.7344
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	57.5	0.7754
AT4G13710			Pectin lyase-like superfamily ...		Lus10038157 [exp]	58.2	0.7492
AT2G44220			Protein of Unknown Function (D...		Lus10036985 [exp]	65.8	0.7136

Compare expression of checked genes

Lus10014670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.