Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 145 / 3e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72890 130 / 5e-35 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G72920 122 / 2e-33 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G46450 127 / 4e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 127 / 5e-33 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16990 125 / 1e-32 RLM3 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative AT2G20142 120 / 2e-32 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G72930 117 / 2e-32 TIR toll/interleukin-1 receptor-like (.1.2) AT1G72940 121 / 4e-32 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT5G41750 124 / 5e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006929 [exp] 369 / 3e-130 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10006928 [exp] 288 / 4e-94 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042020 [exp] 204 / 1e-62 AT1G72890 147 / 3e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10013729 [exp] 165 / 1e-46 AT5G36930 310 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005827 [exp] 146 / 4e-44 AT5G36930 95 / 2e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019142 [exp] 154 / 7e-44 AT1G72890 140 / 1e-36 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10014582 [exp] 149 / 3e-43 AT1G27170 186 / 9e-56 transmembrane receptors;ATP binding (.1.2) Lus10032101 [exp] 152 / 5e-43 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2) Lus10027920 [exp] 147 / 2e-42 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G105501 [exp] 158 / 2e-48 AT5G36930 158 / 4e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069866 [exp] 154 / 2e-46 AT4G12010 179 / 4e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G096849 [exp] 153 / 2e-46 AT5G36930 167 / 4e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G098100 [exp] 151 / 9e-46 AT5G36930 159 / 1e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G097050 [exp] 150 / 3e-45 AT5G36930 158 / 3e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G097000 [exp] 159 / 3e-44 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001314 [exp] 149 / 4e-44 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G062700 [exp] 147 / 5e-44 AT4G16990 149 / 1e-41 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative Potri.013G097300 [exp] 156 / 3e-43 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T002568 [exp] 153 / 3e-43 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10014671 pacid=23165585 polypeptide=Lus10014671 locus=Lus10014671.g ID=Lus10014671.BGIv1.0 annot-version=v1.0 ATGCCGTTAATGCGACCACCTCCTCCACTTCCGCCGGCAGTCCCCCGGCTTCCGCTGAAGTACGACGTCTTCCTAAGCTTCCGCGGGGAAGACGTCCGGG GGAGGTTCGTCGACCACCTTTACGCCAGGCTCCAGACCTTGAAAGTCAACGCCTTCATGGACGAGAAGAAGCTGTCGAGGGGGAAAGTGATCGAGGACTC AATCTTGAAGGCGATCGAAAGGTCCAGAATCTCCGTCATCGTGTTCTCCCCTCGGTTTGCAGACTCGGACTGGTGTCTGGACGAGCTGGTCAAGATCGTG CGGTGCATAACCAGCTTTGGACACGTGGCTATACCGATATTCTTCCACGTGTCCCCTGACGACGTGGCGGCGCAGGCCGGGGTTTATAAGAAGGCGTTTG CACAGCACGCGAAGGCGTTCACGAAGAGCAGGGTTGACGATTGGAGGAAGGCTTTGACTATACTGTCCGGGATTTCCGGATGGGCTTTCGGCGACAAAGA ATCAGAGGCAAAACTAGTGGAAGATATAAGCACGGCAGTACAAAAAAAGCTTAACAAAAATGTACAAAAGTTACCCACACTGAAGCAAATAACTCATACC CAAGCGGGCACCGGCGGCCCAACAAAGTTAGCAACGGCGTCCGGTGTTAAAATTTTTGGGTGGGACAATGAAGAATGGAATGAGCGCCAGACGGAGTTAG TGGCCGTGGCGGAGGAACATTGCCGCTGGAATACGACTTGGCGTCATTGCAGAAGCCGTGGCCGCGTAAACAAGCTGAAGTAA
AA sequence Show only first row Show all	>Lus10014671 pacid=23165585 polypeptide=Lus10014671 locus=Lus10014671.g ID=Lus10014671.BGIv1.0 annot-version=v1.0 MPLMRPPPPLPPAVPRLPLKYDVFLSFRGEDVRGRFVDHLYARLQTLKVNAFMDEKKLSRGKVIEDSILKAIERSRISVIVFSPRFADSDWCLDELVKIV RCITSFGHVAIPIFFHVSPDDVAAQAGVYKKAFAQHAKAFTKSRVDDWRKALTILSGISGWAFGDKESEAKLVEDISTAVQKKLNKNVQKLPTLKQITHT QAGTGGPTKLATASGVKIFGWDNEEWNERQTELVAVAEEHCRWNTTWRHCRSRGRVNKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	0	1
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	3.0	0.9771
AT2G47485			unknown protein		Lus10009156 [exp]	3.7	0.9731
AT3G50910			unknown protein		Lus10028325 [exp]	4.2	0.9688
AT5G57510			unknown protein		Lus10028472 [exp]	4.2	0.9729
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	5.9	0.9689
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	6.4	0.9519
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009137 [exp]	8.9	0.9710
AT2G31945			unknown protein		Lus10013740 [exp]	9.2	0.9586
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	10.2	0.9490
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10028679 [exp]	10.7	0.9582

Compare expression of checked genes

Lus10014671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.