Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02790 394 / 9e-134 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT2G41670 94 / 2e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G07050 87 / 1e-17 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT2G27200 78 / 6e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G52980 71 / 8e-13 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT4G10650 67 / 8e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08410 61 / 2e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G39960 45 / 0.0001 GTP binding;GTP binding (.1) AT3G12080 44 / 0.0002 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006927 [exp] 483 / 2e-169 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10031060 [exp] 98 / 8e-22 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006578 [exp] 81 / 2e-16 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014654 [exp] 77 / 5e-15 AT4G10650 383 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028574 [exp] 78 / 8e-15 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 76 / 3e-14 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10004103 [exp] 62 / 5e-10 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 62 / 6e-10 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021017 [exp] 59 / 6e-09 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209900 [exp] 418 / 2e-143 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.006G048900 [exp] 91 / 2e-19 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G083100 [exp] 87 / 3e-18 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G241100 [exp] 80 / 1e-15 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 71 / 7e-13 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.009G017000 [exp] 68 / 1e-11 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G054200 [exp] 46 / 7e-05 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.004G230600 [exp] 42 / 0.0008 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10014672 pacid=23165619 polypeptide=Lus10014672 locus=Lus10014672.g ID=Lus10014672.BGIv1.0 annot-version=v1.0 ATGGATGTCGAGCTTGCTCGTGGAAGATCTTTGGGGGTATGTACTATTCGTGTTCCTTGTTACACATTTGAGAAGAAGACCATCTTCAGGATCACTAATT TGCTTCATCGACTCGCAGCTCAGAGAAGTAATGATGGCCATGTTGGTGGTGATGACACAGAGTGGATTATGGGGACAACGACCACCACAGTGATTCTCAA GGCTATTGTCGGCGGGAAACCTCCCAGTTGGTACGATGACGGCGGAGGTGGGAGTTCTGCTAACAGTTTCCTCCTGGATGATAACAATGGAGAAGAAGGT ATTGATTGGGATAAAATGGATGCCGATCTCTCTTACTGGACCAAGGCGCTTCGTCCGGTTCAGTGGTATCCCGGTCACATTGCAAAATCAGAGAAGGAAC TGAAAGAGCAGCTGAAGCTGATGGATGTGGTGATTGAGGTTCGAGACGCCAGAATTCCTTTGTCCACCACACATCCACAGATGGATGCTTGGATTGGGAA TAGGAAGAGGATCTTGGTTTTGAACAGGGAAGACATGATATCCAAAGCTGACAGGAATGCATGGGCTACTTATTTTTCAAGGCAGGGAGTGAAGGTTATT TTCTCTAATGGCAAGCTTGGAATGGGCAGTACAAGGCTTGGGAGGTTAGCTCTGGAGATGGCAGCCAATGTTAATGTTAAACGCAAAGCCAGGGGACTTC TTCCTCGCCGAGTTCGAGCTGGGATTGTTGGGTATCCAAATGTAGGGAAGTCCTCTTTGGTCAACCGGTTACTGAAGCGTAGAATGTGTGCTGCTGCCCC GAGACCTGGAATCACAAGAGAACTCAAATGGGTTCGATTTGGTAAAAATCTGGAGCTGTTAGATTCTCCTGGAATTCTCCCAATGCGAATCAGTGATCAA ACAGCTGCCCTAAAGCTTGCCATGTGTGATGACATTGGAGAAAGATCTTATGATGTAGCCGACGTTGCTGCAGTTCTTGTACAGATGCTCATAAGAATCC CGTCAGTTGGTGCAAAAGCTTTTCAGGACCGCTACAAGATCGATCATGATTGCAGCTGCGGTAAAATGAAAGTTCGGCTGGGTTGCACTCGAGAGACCGC CCAGATGAAGCTCTGGCCCTGCATCGCCCAGTCTTTGGGTTCCCTTGAGACGATGATCTATGATCTTGAGTACAGACATTGTTCATGTCGGAAACCAGAA AGCAATGATGGAAGGGTAGCTTCACTATTTGATCAAACAAGCTCTGAAGAAACTAGGAACGGCGACATGGGCGGCCAAATCAAACTTAGCAGGAACACAG CTGGTAGAAATAGAATCGTCCTTGTTCGACCAATTTTCCGGTGGTTGTTGCCGGATATTGAGCCGCCGGCGGGCTATCTTGGGCCTACCCTCACCCGCCT CCATAATAACATGGACCACCTTGAGAAGCTTCTTAGAAACATCCACGATCGAGATAATGGCTACCCGAACCGAACCAACCCACTTTTGCAGCGTAGTGCA AGAGATTCTCCAGCTTCTCCAGGTCGTCCACGACTGCCAACACCTTCTTCTTATTGTTTTTGTCGGTGTCTTACCACGTTGGTATCCTCATCGTTGTCCC ATATCTTCCGGCTCCATTTCAAGTCCGGGTCCAGTTGGTCTCTCAGCCGAACCGATTTGTATTGA
AA sequence Show only first row Show all	>Lus10014672 pacid=23165619 polypeptide=Lus10014672 locus=Lus10014672.g ID=Lus10014672.BGIv1.0 annot-version=v1.0 MDVELARGRSLGVCTIRVPCYTFEKKTIFRITNLLHRLAAQRSNDGHVGGDDTEWIMGTTTTTVILKAIVGGKPPSWYDDGGGGSSANSFLLDDNNGEEG IDWDKMDADLSYWTKALRPVQWYPGHIAKSEKELKEQLKLMDVVIEVRDARIPLSTTHPQMDAWIGNRKRILVLNREDMISKADRNAWATYFSRQGVKVI FSNGKLGMGSTRLGRLALEMAANVNVKRKARGLLPRRVRAGIVGYPNVGKSSLVNRLLKRRMCAAAPRPGITRELKWVRFGKNLELLDSPGILPMRISDQ TAALKLAMCDDIGERSYDVADVAAVLVQMLIRIPSVGAKAFQDRYKIDHDCSCGKMKVRLGCTRETAQMKLWPCIAQSLGSLETMIYDLEYRHCSCRKPE SNDGRVASLFDQTSSEETRNGDMGGQIKLSRNTAGRNRIVLVRPIFRWLLPDIEPPAGYLGPTLTRLHNNMDHLEKLLRNIHDRDNGYPNRTNPLLQRSA RDSPASPGRPRLPTPSSYCFCRCLTTLVSSSLSHIFRLHFKSGSSWSLSRTDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	0	1
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	2.0	0.9447
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	2.0	0.9580
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	3.9	0.9390
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	4.2	0.9325
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	4.5	0.9368
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	5.5	0.9363
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	5.9	0.9323
AT2G45290			Transketolase (.1)		Lus10031128 [exp]	6.3	0.9290
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	6.7	0.9296
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	8.0	0.9321

Compare expression of checked genes

Lus10014672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.