Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 612 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G02780 231 / 7e-65 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 204 / 4e-55 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT3G14490 96 / 2e-20 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 95 / 6e-20 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 87 / 1e-17 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 85 / 9e-17 ATTPS03 terpene synthase 03 (.1.2) AT1G70080 82 / 4e-16 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 81 / 2e-15 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G13300 80 / 2e-15 ATTPS13, TPS13 terpenoid synthase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006923 [exp] 1048 / 0 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 919 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 861 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 803 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 796 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 742 / 0 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 716 / 0 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 673 / 0 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 471 / 2e-153 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082400 [exp] 709 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 708 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 259 / 1e-74 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 223 / 1e-61 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 219 / 1e-60 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 127 / 3e-30 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 123 / 5e-29 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.015G085500 [exp] 114 / 3e-26 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 111 / 2e-25 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.001G308200 [exp] 107 / 4e-24 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10014673 pacid=23165603 polypeptide=Lus10014673 locus=Lus10014673.g ID=Lus10014673.BGIv1.0 annot-version=v1.0 ATGTTGCAGAGTACTTCCCACTTCTCATCATTAACCGCTGCTCCATTATCATCAACCCCTCCGGGTTCAATTAGTCGTCACCTGCATAATGTCGAGTTTT CGACGTCTTCGTACGACACTGCATGGATAGCGATGGTCCCATCTCCCGCTTCCGGCGAAGCTCCTTACTTTCCCAGCAGTGTTAATTGGATAATGGAGAA TCAACAACATGATGGATCTTGGGGTTTACCCGCTCGCACCAGAGATCCTTTGCTGACGAAAGATACTCTGTCGTCGACTTTAGCTTGCATTCTTGCTCTC AAACAATGGGGCATCGGAGACCAACTCATTGGAAAAGGGCTTGGGTTTATGGAGCGGAACTCGGCTGCTCTCGTGGATAAAGCCCAACGAAGCCCAATTG GGTTTGACGTTACATTTCCGGCCATGGTTCAGACCTCCATCAAGGATTTCAATTTGAATCTCCCGCTCAAATCCGTCAACATCGACGCCATTCTCCGCAC GAGAGAATCGATTCTCAACGGCGGGTCGGCAAGTCGGAACTCGGAAGGAAGGAATGCTTACTTGGCTTACATCTCGGAAGGAGTCGGCGATTTGAATGAC TGGGGAATCGCCCTCGGATTCCAGAGAAACAACGGATCTCTGTTCAACTCCCCCTCCGCCACCGCTGCCGCCTTTATTCACCATCACGACCCCAACTCCC TACGCTATCTCCGCTCAGTCGTCGACGTCGGAGGCTCAGTTCCAGCGATTTATCCCCACGGGATCCATGCTCGACTGTGCCTGATTGACGATGTCAAGAG TCTTGGAATGAATCGCCATTTTCGGGATGAAATTAGGCCGACATTGGACGAGATCTATGAATTGTGGGAGCAGGGAGATGAAGAGATATTCCTTGATCCC ACAACTTGTGCAATGGCATTCCGGATATTGCGTCTCAATGGATACTCCGTCTCGTCAGATGATTGTATGTCACGGTTCTGTACAGATGTATTCAGTCGAT TCGAAGAAGATCGGTTTTGGAATGATACCTTAGAAGGGTATTTGAAAGATGAGAGGGCTGTGTTGGAATTGCATAAGGCATCACAAGTCATTTACCCAAA AGAAGCAATTCTGGAACGTCAACAGATATGGACAAGACAGTATTTGATGAAACTGAATGATTCGTCCATGACCTCTTTAGATAATAATCATAGGTCTAAG TCCAATGCTTGTAAATCCATTTCCTCGCAGGTGTCTGATGTGCTCAATTACGCATTCGAGGTCGATCTAGATCGTTTGACTCACAGAAGAAACATTGAAC AATACTGTGTTGACGACGTCAGGACCTTGAAATCCTCCTTCAGGTGTTCGAGCTTCGGGAATAAAGAATTGTTAAAACTAGCTGTAGAAGACTTCAACTT TGGCCAATCATTTTACCAAGATGAGCAAAACCAACTTATGAGGTGGCTTAAGGAATACAAGTTGGACGGACTGAGGATGGCCAAGGTGAAGTTAGGATAT TGTTGCTTCACCGCCGCAACAACTTTCTTTGATCCTAAACTCTCTCATGCCCGCATCTCATGGGCTAAACACGGTGTTCTCACTTCTTTCTTCGATGACG TGTTCGATGTTGATGGAACCACAGAGGAAAAGATTAACCTTCTTGAGCTCTTGGAAAGGTGGGATGTTGCTAGTCCAAAGGTGGAGTTCTGTTCGGAGCG GGTTGAAACAATCTATTGGGCACTTCATGATGCTATTTGCGAGACTGTGGCCAATGCGCTTCCCTTCCAGGGCCGAAGTATCATGGATCACGTCGTCCAG ACTTGGGTGGATTTGGTGAGAGTAATGATGCACCAGAGAGAATGGGCCATAACCAATACAACGCCAACACTAGATGAATACATGGAAACCGCAAGCGTTT TAGTGTCTTTAGGGCCAGTTGTTCTACCAGCCCTCTACTTGTTAGGACCTCAGCTCTCAGATGAAGTGGCCAGAGGTCCAGAAATCGACAATATGTTCAT GGTTTTGAGTAATTGCGGGCGTTTGTTGAATGACCGCATGTGCATTGAGAGAGATGCTGAAGAAGGACTTGCGAATGCGGTCTCGTTGCTAATGAGCCAG CGGGGCGAAACTACACTAGAAGCTATGGATGAAGAAATCAAAGTGTTGATCGATGAGAAGACGAAGGAACTCCTGAGGTTGGTTTTGGATGAAAGGCATA CTGCAGTTCCCAGGGAATGCAGGGAGTTGTTCTGGAAAATGAACAAAGTGATGCGCTTGGTTTACAACAAGAGTGACGCATTTAATTCAACTGATCTATT TGCAGCTTCCAAGTCTTTGATTGAGGAACCCATCTCCCTTACTCTTTGA
AA sequence Show only first row Show all	>Lus10014673 pacid=23165603 polypeptide=Lus10014673 locus=Lus10014673.g ID=Lus10014673.BGIv1.0 annot-version=v1.0 MLQSTSHFSSLTAAPLSSTPPGSISRHLHNVEFSTSSYDTAWIAMVPSPASGEAPYFPSSVNWIMENQQHDGSWGLPARTRDPLLTKDTLSSTLACILAL KQWGIGDQLIGKGLGFMERNSAALVDKAQRSPIGFDVTFPAMVQTSIKDFNLNLPLKSVNIDAILRTRESILNGGSASRNSEGRNAYLAYISEGVGDLND WGIALGFQRNNGSLFNSPSATAAAFIHHHDPNSLRYLRSVVDVGGSVPAIYPHGIHARLCLIDDVKSLGMNRHFRDEIRPTLDEIYELWEQGDEEIFLDP TTCAMAFRILRLNGYSVSSDDCMSRFCTDVFSRFEEDRFWNDTLEGYLKDERAVLELHKASQVIYPKEAILERQQIWTRQYLMKLNDSSMTSLDNNHRSK SNACKSISSQVSDVLNYAFEVDLDRLTHRRNIEQYCVDDVRTLKSSFRCSSFGNKELLKLAVEDFNFGQSFYQDEQNQLMRWLKEYKLDGLRMAKVKLGY CCFTAATTFFDPKLSHARISWAKHGVLTSFFDDVFDVDGTTEEKINLLELLERWDVASPKVEFCSERVETIYWALHDAICETVANALPFQGRSIMDHVVQ TWVDLVRVMMHQREWAITNTTPTLDEYMETASVLVSLGPVVLPALYLLGPQLSDEVARGPEIDNMFMVLSNCGRLLNDRMCIERDAEEGLANAVSLLMSQ RGETTLEAMDEEIKVLIDEKTKELLRLVLDERHTAVPRECRELFWKMNKVMRLVYNKSDAFNSTDLFAASKSLIEEPISLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	0	1
AT3G19615			unknown protein		Lus10031599 [exp]	1.4	0.9846
					Lus10019232 [exp]	2.0	0.9853
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10034042 [exp]	4.5	0.9786
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	4.9	0.9784
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	6.0	0.9822
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	6.3	0.9808
					Lus10004280 [exp]	7.0	0.9780
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	8.0	0.9754
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10005048 [exp]	8.9	0.9746
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	9.5	0.9714

Compare expression of checked genes

Lus10014673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.