Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02730 501 / 2e-180 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 382 / 2e-133 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 151 / 1e-43 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 141 / 3e-38 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 126 / 1e-33 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 128 / 3e-33 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G08560 123 / 4e-31 transducin family protein / WD-40 repeat family protein (.1.2) AT1G71840 118 / 3e-30 transducin family protein / WD-40 repeat family protein (.1) AT2G21390 120 / 4e-30 Coatomer, alpha subunit (.1) AT1G62020 119 / 1e-29 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006916 [exp] 622 / 0 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 391 / 6e-137 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 383 / 6e-134 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 145 / 4e-41 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 144 / 1e-40 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 149 / 2e-40 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 147 / 6e-40 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 145 / 7e-40 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 143 / 6e-39 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G051900 [exp] 555 / 0 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 396 / 3e-139 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 366 / 2e-127 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 153 / 2e-44 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 142 / 2e-38 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.006G045800 [exp] 139 / 4e-37 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.019G096900 [exp] 130 / 4e-35 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 130 / 1e-33 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G087200 [exp] 123 / 4e-32 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G055800 [exp] 124 / 8e-32 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014674 pacid=23165638 polypeptide=Lus10014674 locus=Lus10014674.g ID=Lus10014674.BGIv1.0 annot-version=v1.0 ATGGCCAGCGGCGGAGCAGGCGCTCAACAGTCAGCGCCACCGTATAAACCCTACCGTATCCTCAAGACCCTAAGGAACCACGACCGTGCAGTCTCCTGCG TCAAATTCTCCAACGACGGCAACCTCCTCGCCTCCGCCTCCCTTGACAAAACCCTAATCCTCTGGTCCGCCACCAACTTCTCCCTCCTCAAGCGCCTCGT CGGTCACTCCGAGGGCGTCTCCGACATCGCCTGGTCCTCCGATTCCCACTACATCTGCTCCGCGTCCGACGACCGCACCATCCGCATATGGGACGCGCGC GCCCCCTTCGACTGCCTCAAGATCCTCCGAGGCCACTCCAACTTTGTCTTCTCCGTCAATTTTAACCCCCAGTCTAATCTGATCGTCTCCGGTTCCTTCG ACGAGACCATCCGGATCTGGGAGGTCACCACGGGGAAGTGCGCTCATGTCATCAAGGCTCATTCGCAGCCTGTGACTTCCGTGCATTTCAATCGGGATGG CTCGCTGATCGTTTCGGGCAGCCATGATGGGACTTGTAAGATTTGGGAGGCGGCTACGGGGACTTGCTTGAAGACTCTTATCTCTGATGTTCGTGCTGCT GTGTCATTTGCCAAGTTCTCTCCTAATGGGAAGTTCATTCTGGCTGCCACTCTTGACAGCACTCTTAAGCTGTGGAATTATTCAACAGGAAAGTTCTTGA AGATCTACACAGGCCACACGAACAAAGTATACTGCGTGAGCTCAACATTTTCAGTGACGAACGGGAAGTATATCGTTAGCGGGTCGGAAGACAAGTGTGT GTACTTATGGGATCTGCAGCAAAAGACGATGCTTCAGAAACTCGAAGGCCATTCTGATACGGTCATTTCTGTAAGCTGTCACCCTACTGCCAATAGAATA GCTTCTGCAGGTCTTGATGGAGATAGAAGCATCAAAATCTGGGTGCAAGACTCCTGA
AA sequence Show only first row Show all	>Lus10014674 pacid=23165638 polypeptide=Lus10014674 locus=Lus10014674.g ID=Lus10014674.BGIv1.0 annot-version=v1.0 MASGGAGAQQSAPPYKPYRILKTLRNHDRAVSCVKFSNDGNLLASASLDKTLILWSATNFSLLKRLVGHSEGVSDIAWSSDSHYICSASDDRTIRIWDAR APFDCLKILRGHSNFVFSVNFNPQSNLIVSGSFDETIRIWEVTTGKCAHVIKAHSQPVTSVHFNRDGSLIVSGSHDGTCKIWEAATGTCLKTLISDVRAA VSFAKFSPNGKFILAATLDSTLKLWNYSTGKFLKIYTGHTNKVYCVSSTFSVTNGKYIVSGSEDKCVYLWDLQQKTMLQKLEGHSDTVISVSCHPTANRI ASAGLDGDRSIKIWVQDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	0	1
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	1.0	0.8929
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	1.7	0.8819
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	4.7	0.8876
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	6.3	0.8603
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	6.9	0.8690
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	7.5	0.8760
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	7.7	0.8710
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	7.9	0.8705
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	8.5	0.8622
AT5G18850			unknown protein		Lus10033997 [exp]	8.8	0.8706

Compare expression of checked genes

Lus10014674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.