Plant FIBer expression Database

Lus10014675 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02725 154 / 4e-48 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006915
[exp]
280 / 1e-97 AT4G02725 160 / 1e-50 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G210700
[exp]
190 / 4e-62 AT4G02725 152 / 2e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10014675 pacid=23165633 polypeptide=Lus10014675 locus=Lus10014675.g ID=Lus10014675.BGIv1.0 annot-version=v1.0
ATGGGAACTCTATCGCCATTCTTGCCGTTCTCCTTGAGCTTAGCTTCATTCCCGAAAGATCGCAGTTGCTACTTATCTTCTTCAAGTACGACCCAAATAT
GGCAGACCGTCTCTTTGACGAAGACCCTGAAACTCAGCAGAAGCAGAACTGTGGTCGTCCATGGCGGAAAAATTAATTCAGGAGACTCACGGCGAGATGG
GTCTCAATTCATGGATGAGGACGGCGTGGTGGAAGACATGGATGGCTATATGAACTATCTCTCTCTCGAATATGAGTCCGTCTGGGACACCAAACCATCC
TGGTGCCAACCCTGGACGATAGGTCTAACGGGAGCGTTGATGATCAGTGGTAGCTGGGTGGTTTTGCAGTCAGTTGCAATCACCGCAATTGTTCTCTTGT
TAGTATCTGCTTGGTGGTACATTTTCCTCTACTCTTATCCCAAGGAATACTCGAATATGATCGCTGAACGGCGAAAGAGGGTGACGAGTGGAGACGAAGA
TACATTTGGTCTGAAGAGGAGTCAGCTAAATGAGATGTGA
AA sequence
>Lus10014675 pacid=23165633 polypeptide=Lus10014675 locus=Lus10014675.g ID=Lus10014675.BGIv1.0 annot-version=v1.0
MGTLSPFLPFSLSLASFPKDRSCYLSSSSTTQIWQTVSLTKTLKLSRSRTVVVHGGKINSGDSRRDGSQFMDEDGVVEDMDGYMNYLSLEYESVWDTKPS
WCQPWTIGLTGALMISGSWVVLQSVAITAIVLLLVSAWWYIFLYSYPKEYSNMIAERRKRVTSGDEDTFGLKRSQLNEM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02725 unknown protein Lus10014675
[exp]
0 1
AT5G22340 unknown protein Lus10043400
[exp]
1.0 0.9790
AT2G24020 Uncharacterised BCR, YbaB fami... Lus10015490
[exp]
2.2 0.9693
AT5G40950 RPL27 ribosomal protein large subuni... Lus10041553
[exp]
2.8 0.9773
AT5G65220 Ribosomal L29 family protein ... Lus10000745
[exp]
6.0 0.9733
AT4G34620 SSR16 small subunit ribosomal protei... Lus10027058
[exp]
6.5 0.9752
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Lus10037822
[exp]
8.8 0.9672
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Lus10013041
[exp]
8.8 0.9668
AT2G01918 PQL3 PsbQ-like 3 (.1) Lus10004054
[exp]
10.5 0.9630
AT5G44650 Y3IP1, AtCEST Ycf3-interacting protein 1, Ar... Lus10008075
[exp]
11.0 0.9500
AT3G25470 bacterial hemolysin-related (.... Lus10008746
[exp]
11.2 0.9593

Lus10014675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.