Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09800 273 / 7e-96 RPS18C S18 ribosomal protein (.1) AT1G34030 273 / 7e-96 Ribosomal protein S13/S18 family (.1) AT1G22780 273 / 7e-96 RPS18A, PFL1, PFL 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022057 [exp] 283 / 1e-99 AT4G09800 303 / 1e-107 S18 ribosomal protein (.1) Lus10042603 [exp] 281 / 4e-99 AT1G22780 304 / 5e-108 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1) Lus10006914 [exp] 281 / 4e-99 AT4G09800 304 / 5e-108 S18 ribosomal protein (.1) Lus10034179 [exp] 280 / 2e-98 AT1G34030 302 / 3e-107 Ribosomal protein S13/S18 family (.1) Lus10043405 [exp] 226 / 2e-77 AT1G34030 245 / 3e-85 Ribosomal protein S13/S18 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211200 [exp] 280 / 1e-98 AT4G09800 276 / 7e-97 S18 ribosomal protein (.1) Potri.002G051300 [exp] 279 / 3e-98 AT4G09800 275 / 2e-96 S18 ribosomal protein (.1) Potri.005G196600 [exp] 273 / 7e-95 AT4G09800 278 / 2e-96 S18 ribosomal protein (.1) Potri.002G064632 [exp] 134 / 8e-42 AT4G09800 151 / 7e-49 S18 ribosomal protein (.1) Potri.002G088400 [exp] 46 / 1e-06 AT1G77750 175 / 4e-56 Ribosomal protein S13/S18 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0303 [flax] [poplar] H2TH PF00416 [flax] [poplar] Ribosomal_S13 Ribosomal protein S13/S18
Representative CDS sequence Show only first row Show all	>Lus10014676 pacid=23165658 polypeptide=Lus10014676 locus=Lus10014676.g ID=Lus10014676.BGIv1.0 annot-version=v1.0 ATGTCGCTCGTTGCCAATGAAGAATTCCAGCACATTCTTCGTGTTCTCAACACCAATGTCGACGGAAAGCAGAAGATTATGTTTGCCCTGACCTCCATTA AGGGTATTGGTCGCCGATTTGCCAATATCGTCTGCAAGAAGGCCGATGTTGACATGAATAAAAGAGCTGGAGAGTTGTCATCTGAAGAGCTTGACAAGCT AATGACAGTTGTTGCTAATCCTCGTCAGTTCAAGATCCCAGACTGGTTCCTGAATAGGCAGAAGGATTACAAGGACGGAAAGTATTCCCAAGTTGTCTCT AACGCAGTGGACATGAAGCTGAGGGATGATCTCGAGAGGCTGAAGAAGATCCGGAACCACCGTGGTCTGCGTCACTACTGGGGTTTGAGAGTGCGAGGAC AGCACACCAAGACTACTGGTCGTAGAGGAAAGACGGTTGGTGTGTCCAAGAAGCGATAA
AA sequence Show only first row Show all	>Lus10014676 pacid=23165658 polypeptide=Lus10014676 locus=Lus10014676.g ID=Lus10014676.BGIv1.0 annot-version=v1.0 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSSEELDKLMTVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS NAVDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	0	1
AT5G27700			Ribosomal protein S21e (.1)		Lus10015173 [exp]	1.7	0.9706
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	2.8	0.9663
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	3.0	0.9637
AT5G02610			Ribosomal L29 family protein ...		Lus10019179 [exp]	4.0	0.9554
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	4.9	0.9505
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	5.5	0.9538
AT1G07830			ribosomal protein L29 family p...		Lus10032334 [exp]	5.7	0.9478
AT2G20450			Ribosomal protein L14 (.1)		Lus10008246 [exp]	5.8	0.9383
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019681 [exp]	6.5	0.9435
AT5G23535			KOW domain-containing protein ...		Lus10022069 [exp]	6.9	0.9394

Compare expression of checked genes

Lus10014676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.