Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024695 [exp] 167 / 3e-51 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 150 / 2e-44 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 145 / 7e-43 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 135 / 3e-39 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024694 [exp] 113 / 8e-32 ND / Lus10042477 [exp] 97 / 2e-24 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10022888 [exp] 96 / 2e-24 ND 38 / 0.010 Lus10026190 [exp] 86 / 2e-20 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042331 [exp] 80 / 6e-19 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 44 / 2e-05 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 41 / 0.0002 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014678 pacid=23165654 polypeptide=Lus10014678 locus=Lus10014678.g ID=Lus10014678.BGIv1.0 annot-version=v1.0 ATGGAAGATCGTGAAGGTAGCCTGCTCGCAAGGGTCATCAAATATGGTTTCTCCCATGATGCTAAACATTTAGTCATTGACCTGCGCACTTACGAATCCT GGGAAGATGTTCCGGAATACGTTTTCTCTGATTTGTTTGATACCACCACAGCTTGCAATTTTGAAACCCTGGAATTAAACCGTTTCACGTTTTATCCCGA ATTTCAATCTCTTGGTTTCCGGATGCTAACAAGGTTAGAGTTGTTGGAATGCGCGTTTCTGTTTGATCATGAAGAGTTTATCGACACTTTCTCTGAATTT CCATGTCTGGAGCATTTGGTGTTGGATGCTCTGTCCACCGAGGAGTACCGTAATGTTGATGATACGAGGATTTCCGGACACAGATTGCTTAGTCTGAGCG TAAAGGATCCTCATTTCAGGAAATTTGAAATACATGCACCAAAACTGGAATATTCAAAGAGCTAA
AA sequence Show only first row Show all	>Lus10014678 pacid=23165654 polypeptide=Lus10014678 locus=Lus10014678.g ID=Lus10014678.BGIv1.0 annot-version=v1.0 MEDREGSLLARVIKYGFSHDAKHLVIDLRTYESWEDVPEYVFSDLFDTTTACNFETLELNRFTFYPEFQSLGFRMLTRLELLECAFLFDHEEFIDTFSEF PCLEHLVLDALSTEEYRNVDDTRISGHRLLSLSVKDPHFRKFEIHAPKLEYSKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014678 [exp]	0	1
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	1.0	0.9500
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	1.7	0.9454
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	2.4	0.9457
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	2.8	0.9245
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	3.5	0.9337
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	3.7	0.9303
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	4.4	0.9051
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10027384 [exp]	4.5	0.9191
AT1G76480			unknown protein		Lus10006035 [exp]	5.0	0.9366
AT1G45150			unknown protein		Lus10002387 [exp]	5.8	0.8916

Compare expression of checked genes

Lus10014678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.