Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02715 83 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006911 [exp] 305 / 2e-106 AT4G02715 122 / 6e-35 unknown protein Lus10022059 [exp] 171 / 1e-53 AT4G02715 151 / 4e-46 unknown protein Lus10042605 [exp] 162 / 5e-50 AT4G02715 154 / 4e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211400 [exp] 135 / 1e-39 AT4G02715 105 / 4e-28 unknown protein Potri.002G050900 [exp] 121 / 5e-34 AT4G02715 96 / 1e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014679 pacid=23165663 polypeptide=Lus10014679 locus=Lus10014679.g ID=Lus10014679.BGIv1.0 annot-version=v1.0 ATGGAGACGCTTGTAGTTGCAGCTCCTCACCACAGGAATCAGTATTATGGCAGGATCAAGCCACATGCTTCCTCTGGCCGTAGGCAGTTTAGAGGGATAA ATTGCCGCACTTTCCAGTATGGACCTGGAATTCTCCCTATCCCTTTCAAAACCCCTTCTAGGAAACCCAACACTCCTGACTCACCTTGTTCTTCAGCTAA TACACCTTCATATTTCACTGAATCTCTGTCAAAAGTACATTGTGGGGGCACTGATCGTCGCAAGGCCACTGCTGGAAGCTCTCCCATTCCAATCAGCGTG AAAGAGCCCAGAAAGTTGTGTACTTTGAGTGATGACATCATGTTAACACCACCAGATGAGGAGGACTCTTGTTTCTCTGAGCTATGGGCTGGCCCTGCTT ATTCAAATTCCCCACCGCCTAGTTCGTTGCCGATCCCTAACTTCTTAATGAAGCCAAAACGATCTGCGTCTCTGGAGATACCTCTCCCGGATTCTGACAT TCAGTTGGACCTGGTTTCCAAGTCTGCTCCTGCTTCCCCTTCAAGGGAGGAGTGTAAGTATAACTTTCCTGCTGCGAGTGACATGTTATGCACAGCTGAC TTTGCGACCAAGATTCTCCGTTGCATCCTCAACATTGATCGAGGAGATAATTGGGTTGCCAGTTAG
AA sequence Show only first row Show all	>Lus10014679 pacid=23165663 polypeptide=Lus10014679 locus=Lus10014679.g ID=Lus10014679.BGIv1.0 annot-version=v1.0 METLVVAAPHHRNQYYGRIKPHASSGRRQFRGINCRTFQYGPGILPIPFKTPSRKPNTPDSPCSSANTPSYFTESLSKVHCGGTDRRKATAGSSPIPISV KEPRKLCTLSDDIMLTPPDEEDSCFSELWAGPAYSNSPPPSSLPIPNFLMKPKRSASLEIPLPDSDIQLDLVSKSAPASPSREECKYNFPAASDMLCTAD FATKILRCILNIDRGDNWVAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02715			unknown protein		Lus10014679 [exp]	0	1
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	8.1	0.8943
AT4G36980			unknown protein		Lus10009350 [exp]	11.7	0.8554
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	15.0	0.8791
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	18.7	0.8661
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	19.1	0.8690
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	22.6	0.8755
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	22.8	0.8391
AT5G23250			Succinyl-CoA ligase, alpha sub...		Lus10028767 [exp]	24.2	0.8387
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10041126 [exp]	24.3	0.8660
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	28.9	0.8387

Compare expression of checked genes

Lus10014679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.