Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03110 488 / 5e-172 TRM82, AtTRM82 tRNA modification 82, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 56 / 4e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 54 / 9e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 54 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 51 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 51 / 1e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G64610 50 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 49 / 3e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 48 / 8e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 47 / 1e-05 RACK1B_AT receptor for activated C kinase 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006910 [exp] 758 / 0 AT1G03110 525 / 0.0 tRNA modification 82, Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 60 / 2e-09 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042333 [exp] 54 / 7e-08 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 55 / 1e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 55 / 1e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 54 / 2e-07 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 53 / 2e-07 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 52 / 3e-07 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 51 / 8e-07 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211600 [exp] 576 / 0 AT1G03110 520 / 0.0 tRNA modification 82, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 60 / 2e-09 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 59 / 3e-09 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 54 / 2e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.011G045500 [exp] 54 / 2e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G263400 [exp] 53 / 3e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 51 / 6e-07 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 50 / 2e-06 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 50 / 2e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G116900 [exp] 50 / 3e-06 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014680 pacid=23165591 polypeptide=Lus10014680 locus=Lus10014680.g ID=Lus10014680.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATTCTCACGTGGAAGGCGGTGAAAACAACAAGGATGTTGACGTTGCCCCTGCTCTAATAGCTGTTCACCCCGCCCAGGATTCTGTTGCAG TCGCCGTCGGTTCTGACCTCCGCATCTACGACCTCCGAACGGATTCTGGGATTTCTTTGCGAGATGATTCTAAGGAGCCTTTCCACAAGGATTCCATAAG AGCTATTCGTTACAGTGCAAATGGGAAGCTCTTTGTTTCGGCGGGTGATGATAAGATTGTGAAGATTTGGTCCACTGACACTTGGCGCTGCATCAGTTCT GTGTCATCCGAGAAGAGAGTGAGTGCAGTTTCCATAAGCAATGATGGGCTGTATGTTTGTTATGCTGACAAATTTGGAGTTGTCTGGGTTGTAGATATCC ATGATCTTGACGTCAATGATGCTATCTCCAATAGGAAGCCAGCATCATTGTTGGCCCATTATTGCAGCATAATTACTAGGCTGGAATTTTCGCCGGATGG ATGCTTTATAATTAGTGCTGACCGGGACTTCAAAATTCGTGTTTCTGTGTTTCCGAAGAAGCCTTTAGAAGGAGCTCATGAAATACAAAGTTTTTGCCTT GGACATACACAGTTTGTTTCCAGCCTTGCTTTTGTTTGCAGCAAGGAGTTCCCCCATGGGTTTCTTCTTTCTGGTAGCAGTGATTCGGCAGTTAGATTAT GGGATATTACTTCTGGATCTCTACTGGACACTTGTGAAGTAGGCACGAAGGCAGGAGTTTCAGAGTCCAATGAAAGTGAGGAGAGCTGCAGTGCTGTCAC TGATCTGTGTGCAATCCAGGATAGTAATCTTGTTGCAGTAGCCGTTCAAAGCTTCCGAGGGGTAATTCTTTTGGGCTGTGACTTCTCTTCTCAAACTCTT CATTTTTCCAAGGTGGTTTCCATAAAGGAGGAGAATTTCATTCCTACAAGCATGGGAAGTACAGTTGGCGAATTACTGTGGTTCGTAACGGGCGTCTCCA AATTGTCTGGCTCCGATCTCAAGTCTCTAGTTCGTTTGAAGGTTGTTACTGGTATCAGGAAAGGCGAACCAGCTGTTGTAGGAGACCACGAAATACCTGG AGGCCAGAAGCTGCTGGAGAAGTTGCAAGGGAGTGTATCGATCGATGAGAGTGTTTTCTTGGCAGTTGCCGAAGCTTTGAAAGTTGCAATGTGCAATCTG TTGATTAAGAAGCAGTATTCAACGGATCACAGGGAGTTTAGGAAGAGAACCAGAAATGATAGAAAAGGAAGACGCTAG
AA sequence Show only first row Show all	>Lus10014680 pacid=23165591 polypeptide=Lus10014680 locus=Lus10014680.g ID=Lus10014680.BGIv1.0 annot-version=v1.0 MEEDSHVEGGENNKDVDVAPALIAVHPAQDSVAVAVGSDLRIYDLRTDSGISLRDDSKEPFHKDSIRAIRYSANGKLFVSAGDDKIVKIWSTDTWRCISS VSSEKRVSAVSISNDGLYVCYADKFGVVWVVDIHDLDVNDAISNRKPASLLAHYCSIITRLEFSPDGCFIISADRDFKIRVSVFPKKPLEGAHEIQSFCL GHTQFVSSLAFVCSKEFPHGFLLSGSSDSAVRLWDITSGSLLDTCEVGTKAGVSESNESEESCSAVTDLCAIQDSNLVAVAVQSFRGVILLGCDFSSQTL HFSKVVSIKEENFIPTSMGSTVGELLWFVTGVSKLSGSDLKSLVRLKVVTGIRKGEPAVVGDHEIPGGQKLLEKLQGSVSIDESVFLAVAEALKVAMCNL LIKKQYSTDHREFRKRTRNDRKGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	0	1
AT5G58370			P-loop containing nucleoside t...		Lus10009919 [exp]	1.4	0.9022
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	1.7	0.8955
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	2.0	0.9007
AT1G64880			Ribosomal protein S5 family pr...		Lus10021785 [exp]	2.2	0.8827
AT1G64880			Ribosomal protein S5 family pr...		Lus10034602 [exp]	2.6	0.8786
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	3.7	0.8638
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10028007 [exp]	6.0	0.8597
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	7.3	0.8811
AT1G76120			Pseudouridine synthase family ...		Lus10021231 [exp]	7.4	0.8669
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10015604 [exp]	8.8	0.8192

Compare expression of checked genes

Lus10014680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.