Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028682 [exp] 107 / 6e-27 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10006908 [exp] 96 / 4e-24 AT3G22600 99 / 4e-26 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10000860 [exp] 89 / 3e-20 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10037467 [exp] 71 / 5e-14 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003922 [exp] 71 / 5e-14 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003923 [exp] 65 / 4e-12 ND 40 / 0.002 Lus10019151 [exp] 56 / 6e-09 ND / Lus10006880 [exp] 54 / 2e-08 ND / Lus10036954 [exp] 41 / 0.0006 ND 48 / 5e-06
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014682 pacid=23165614 polypeptide=Lus10014682 locus=Lus10014682.g ID=Lus10014682.BGIv1.0 annot-version=v1.0 ATGGCTCTTAACCTCCCTGGCGCTTGCAAGTCCAGGACTCCACCCCTTAGCCAGTGTCCTAAAGATGATGCGGAAGGGCCAGGAAGTTCGCCGTCAGAGA GTTCGCAAGGGCCGGCAGGGTCCACCAATAAGACGCCGCCGGCTGATCCTGCTGACATTACTCCCACAGGGTCGGATGTCCCGTTCACTGATGATTACGA TGGAAGTACTTCTGATGCCACCACCATCTTCGGCAGAGCTTCTGTTCAACCCATGCTTCTCTATCTCCTCATTGCTACGAAGGAGCTTCTCGTGGGGGGT GTTGTTGCAAGCGGTCCTCCTACAGAAGAATTGCACACTCCCCTCGGTCATGCTTTGAATGCACGTTTGAGAGTGTTCATGCTCGTAAATGGCGTGTGGC GTCTCGAGCACGATGTTTATACTTACGATGAGATGCAGTGGAGTTCAAGCTCAGTGAAGCAGAAGGTACTGAATGGTGCCCTAGCTATCAAGTTCTGGAC TGTGCACCCTAGTGATCCAATGATCGCGTATGTGAGCATGGATACTTCGTTCCTCGAGTGCAACTTTCGAGATAAGACAATGGAATTGTTGTCCGAGCAA CAGAACAACTGGTCCCAAGTAGTAACGTTGTCTCTTCCACCATGGCCCACTCCTCTTCCTGCACTTGTTTAA
AA sequence Show only first row Show all	>Lus10014682 pacid=23165614 polypeptide=Lus10014682 locus=Lus10014682.g ID=Lus10014682.BGIv1.0 annot-version=v1.0 MALNLPGACKSRTPPLSQCPKDDAEGPGSSPSESSQGPAGSTNKTPPADPADITPTGSDVPFTDDYDGSTSDATTIFGRASVQPMLLYLLIATKELLVGG VVASGPPTEELHTPLGHALNARLRVFMLVNGVWRLEHDVYTYDEMQWSSSSVKQKVLNGALAIKFWTVHPSDPMIAYVSMDTSFLECNFRDKTMELLSEQ QNNWSQVVTLSLPPWPTPLPALV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014682 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006908 [exp]	1.0	0.9475
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	6.0	0.9140
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022065 [exp]	6.0	0.9140
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	7.1	0.9217
AT5G25530			DNAJ heat shock family protein...		Lus10021961 [exp]	9.5	0.7996
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	9.7	0.9054
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10043189 [exp]	10.2	0.8136
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040341 [exp]	12.0	0.8802
					Lus10033358 [exp]	12.0	0.8922
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	12.0	0.8998

Compare expression of checked genes

Lus10014682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.