Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23535 145 / 9e-43 KOW domain-containing protein (.1) AT2G48140 106 / 5e-28 EDA4 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT1G05450 83 / 2e-18 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G22620 73 / 7e-15 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22600 53 / 3e-08 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G48130 48 / 2e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G14815 44 / 4e-05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G03103 43 / 6e-05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT5G54600 44 / 7e-05 Translation protein SH3-like family protein (.1.2) AT2G44290 43 / 0.0001 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006906 [exp] 177 / 1e-55 AT2G48140 119 / 1e-35 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10006905 [exp] 164 / 5e-50 AT5G23535 280 / 3e-98 KOW domain-containing protein (.1) Lus10042614 [exp] 160 / 1e-48 AT5G23535 286 / 6e-101 KOW domain-containing protein (.1) Lus10022069 [exp] 159 / 4e-48 AT5G23535 284 / 5e-100 KOW domain-containing protein (.1) Lus10022067 [exp] 125 / 3e-34 AT2G48140 122 / 2e-35 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10042613 [exp] 112 / 1e-29 AT2G48140 107 / 1e-29 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10010575 [exp] 99 / 4e-24 AT1G05450 142 / 2e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10021911 [exp] 85 / 3e-19 AT1G05450 121 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10041196 [exp] 85 / 3e-19 AT1G05450 122 / 5e-35 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062600 [exp] 162 / 3e-49 AT5G23535 254 / 6e-88 KOW domain-containing protein (.1) Potri.005G212000 [exp] 134 / 1e-37 AT2G48140 113 / 4e-32 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.002G050200 [exp] 118 / 7e-32 AT2G48140 127 / 1e-37 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.010G085200 [exp] 96 / 5e-23 AT1G05450 134 / 2e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.008G155200 [exp] 94 / 2e-22 AT2G48140 121 / 2e-34 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.010G085400 [exp] 49 / 1e-06 AT3G22600 140 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G155100 [exp] 48 / 1e-06 AT3G22600 149 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G415400 [exp] 46 / 1e-05 AT5G54600 243 / 2e-82 Translation protein SH3-like family protein (.1.2) Potri.010G085000 [exp] 41 / 0.0004 AT4G14805 105 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014683 pacid=23165643 polypeptide=Lus10014683 locus=Lus10014683.g ID=Lus10014683.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTATCAGCAATGTGGATGCTACTAGCAACAACAACAACACTACTCCTCACATGCCCGAATTTCGGAGTGCAAGCACAGCAGACTATCAGCA CGCCGTGCACGGCTTCAATGATAGTCAGCTTCTCGCCGTGCCTGAATTTCGTAACGGGGAGCAGCAACAATGGCAGCTCACCTACTGCCACGTGCTGCAA CGCCCTGAAGGGACTGGTGAGCAGCAGCATGGACTGTGCTTGCCTTTTGGTCACTGCTAATGTCCCTCTTCAGTTGCCTCGACCCGTCGCCGTTCCCCTT CCTAGAGCTTGCAAGATGGGCGTCCCCTTGAGATGCAAAGCTTCTGGGTCTCCTCTGCCGGCACCAGGACCTGCCATTTTGGGCGGCCCGCCTGCTCCTA ATAGCCCACAAGGTACAACTGGTTCAAAAGCAACAGGAGATGCACCAGCTCCAGATTCCACGGTGGTGATGCCGCTATCGCCGGCGATCCCACCGGAATC AGACGACCCCACAACAACCACCACCAGGACTGGACCTCTGGGCAAGGATAAAGGTGAGACTGGTGTCGTCAAACGTGTCGTTCGCTCTCGAAATCATGTT TTTGTTGAGGGCAAAAATCTGGTTAAAAAGCATATAAAAGCAGGTGAAGGTCACGAGGGAGGAATTTTTATAGTAGAAGCTCCACTCCATGCCTCAAATG TCCAAGTTGTTGATCCAGTCACAGGGTACGGTGTACTAAAATCACAGACGTTTACTGGATTCCATCACATGTCCTTACTGTGGAATAATTTCTATTATAC ATTGTTGTTCCTTCTGCAGGAGGCCTTGCAAGGTCAGGATCAAGTATCTGAGGATGGTACCAAAGTAAGAGTTTCAAGAGGTATGGGAGCATCTGGATCC ATCATTCCACGTCCAGAAATTCTGAAAATAAGAACGACACCAAGGCCTGCTGTAGGTAAACATGTTGAAGCCTCTCTTACTCTTATAGTTAAACAGGAAC GTAATCAGGAGTCTTGA
AA sequence Show only first row Show all	>Lus10014683 pacid=23165643 polypeptide=Lus10014683 locus=Lus10014683.g ID=Lus10014683.BGIv1.0 annot-version=v1.0 MEKLSAMWMLLATTTTLLLTCPNFGVQAQQTISTPCTASMIVSFSPCLNFVTGSSNNGSSPTATCCNALKGLVSSSMDCACLLVTANVPLQLPRPVAVPL PRACKMGVPLRCKASGSPLPAPGPAILGGPPAPNSPQGTTGSKATGDAPAPDSTVVMPLSPAIPPESDDPTTTTTRTGPLGKDKGETGVVKRVVRSRNHV FVEGKNLVKKHIKAGEGHEGGIFIVEAPLHASNVQVVDPVTGYGVLKSQTFTGFHHMSLLWNNFYYTLLFLLQEALQGQDQVSEDGTKVRVSRGMGASGS IIPRPEILKIRTTPRPAVGKHVEASLTLIVKQERNQES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	0	1
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	1.0	0.9737
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	1.7	0.9691
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	2.0	0.9711
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	2.8	0.9680
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	4.2	0.9535
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	4.9	0.9554
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	5.5	0.9571
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	5.5	0.9629
AT5G37690			SGNH hydrolase-type esterase s...		Lus10039877 [exp]	5.5	0.9521
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	6.5	0.9558

Compare expression of checked genes

Lus10014683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.