Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63240 604 / 0 DNAse I-like superfamily protein (.1) AT2G32010 566 / 0 CVL1 CVP2 like 1 (.1.2) AT5G26110 380 / 1e-127 Protein kinase superfamily protein (.1.2) AT1G05470 353 / 7e-112 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G65090 340 / 6e-109 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 325 / 1e-103 DNAse I-like superfamily protein (.1.2) AT4G18010 314 / 5e-97 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G37440 271 / 2e-83 DNAse I-like superfamily protein (.1.2) AT1G34120 273 / 6e-82 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT2G01900 216 / 9e-63 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006904 [exp] 959 / 0 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10042619 [exp] 600 / 0 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 577 / 0 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10006903 [exp] 429 / 2e-146 AT5G26110 382 / 2e-136 Protein kinase superfamily protein (.1.2) Lus10006597 [exp] 357 / 2e-116 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10033398 [exp] 341 / 3e-108 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 338 / 1e-107 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10003010 [exp] 318 / 8e-99 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10028884 [exp] 312 / 6e-98 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050000 [exp] 731 / 0 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 714 / 0 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 622 / 0 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G155700 [exp] 619 / 0 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.002G049900 [exp] 383 / 9e-129 AT5G26110 405 / 9e-146 Protein kinase superfamily protein (.1.2) Potri.005G212800 [exp] 383 / 9e-129 AT5G26110 401 / 4e-144 Protein kinase superfamily protein (.1.2) Potri.010G247800 [exp] 348 / 2e-111 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 344 / 3e-109 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 342 / 4e-108 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 335 / 7e-107 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10014684 pacid=23165626 polypeptide=Lus10014684 locus=Lus10014684.g ID=Lus10014684.BGIv1.0 annot-version=v1.0 ATGGATATTGAGGAAGGTGTCAAAGATGGATCCCTGGTTCTAATTAAGCAAGGAGCTGAAGCTAGGGTGTTTGAGTCGAATTTTGTGGGAAGGAGATGCG TCATTAAGGAAAGGTTCTCGAAAAAGTATAGGCATCCAACTTTGGATGATAAGCTCACTCTAAAGCGATTGAATGCTGAAGCCAGATGCATGACTAAAGC AAGACGGCTTGGAGTTTCCACTCCCGTTCTTTACGCTGTGGATACTGTATTGCATTCTTTAACATTCGATTTCGTTGATGGTGCTGCTGTGAAAGATGTC CTCCTCGAGTTCGGGTCAAAGGGAGTTGTGGAAGAAAGACTGGATGATATTGCTGTGCAGATTGGTGATGCAATTGCTAAGCTACATGATGGTGGGCTTA TCCATGGAGATCTCACAACCTCAAACATGCTAATCAGGAACGGTACCAACCAATTGGTGCTCATTGATTTCGGTCTAAGCTTTACATCAACCCTTCCAGA GGACAAAGCTGTTGATCTTTATGTGCTCGAGCGAGCATTGCTCTCAATGCATTCCTCATGCGGTAACGTGATGGACCGGATACTTGCTGCATATAGGAAG TCGTCAAAGCAGTGGTCAGCTACGTTCAACAAGCTAGCTCAAGGTTTGGTCGTTTTGCTTTCGTGGCCCAAGACATTGGTCAAGAAATGGTTTAACATCA AGAGCAAAGCTGAAGAATTCCAGGCAGACGATACTACCTACTGTTATGGAGGAGGAGATGTACAAGGAGATCAAGGTTGTTGTGATGAAGATTGGAGAAG CAACTTAACAGGGAGAGAGGCAGCAGCATGCAGCATCAAGAAAAGCAAAACAGATGGAATAGAGAGGTTGAGTAAGAGAAGAAGCTCTGATAGAGTCAGA CGAAGTAAAATTGATATTGATGCTGCTCATGTCACAGAGGTTAACAATTATAGGGTTTTTGTTGCCACTTGGAATGTGGCTGGAAAATCTCCTCCAAGTC ACTTGAGTCTTGAAGACTGGCTTCACACTTCACCTCCCGCTGACATTTATGTTCTTGGATTCCAAGAAATCGTTCCTCTAAACGCCGGCAACGTTCTGGG CACAGAGGACAACGGCCCGGCGAGAAAATGGCTATCCCTAATTCGAAATACACTCAACACACTTCCCGGGGGCGCCATCACCGGTGCTTGCCGCACTCCT TCTCCTATTCCTGATCCGCTTGTAGAGTCGGACGCCGATTTCGAAGCTTCGGAAACCAGACAAAACGTTTCGTCATTTTTCCACCGCCGTTCGTTCCAGT CGTTGAGCCGGAGCATGAGGATGGATGACGGTGGAGGCGAAATGATTCAAACACAGTCAAGGCTGGACCGGCGATTCAGTGTCTGTGAAGACAGAACAAT GATGTTTGGGCAGAGGAGCAACGAAACCTATGACCCGAATTTCGTATATGGTGGTTACTCATCGGACGATGAGAGTTCCCCTGTTACGGCTCAGTGTTCG CCAATTGATCCATCAATCGGAACGGAAGAGAGGGAGGGGGGAAGTTATGGGCAGCAATCAAGGTACTGTTTGGTGGCTAGCAAGCAGATGGTTGGGATTT TCTTAACGGTCTGGGTTAGGAGCAGTCTTAAAGATGATGTGAAGAACATGAAGGTTTCTTGCGTTGGCAGAGGATTGATGGGTTATCTAGGCAACAAGGG ATCCATTTCAATTAGCATGTCATTGCAGCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGACTTCCGGGCAGAAGGAAGGGGATGAGCTAAGGAGGAAC TCTGATGTCATGGAGATTCTCAGGAAGACTAGGTTTCCTAGAGTCCATGATGGAGATGAGAATTCTCCCCAGACAATCCTAGACCATGAGGGATTTGAAC TATCGAATTGCATTGTCATACCGATCGGTGAAGGCCCTTGTAGAGATGTGCAACTGGAGCTCCGGATGGAGAAGAGGTTAGGGAGAGTGTTTGAAGGATG GCATGAGGGTAGAATATACTTCCCTCCAACGTACAAATACTCTAATAATTCAGACAGATACGCTGGAGATGATAGACATCTGAAGGAAAAGCGAAGAACT CCTGCCTGGTGTGACCGGATTCTATGGTATGGAAGAGGCTTGAATCAGTTATCATATGTGCGGGGCGAATCGAGGTTCTCGGATCATAGACCAGTGTACA GTGTATTTTCAGCAGAGGTGGAGTCGATAAACCGTAGCAAAATGAAGAAGAGCATGAGCTGTTCTAGTAGCTCCAGAGTTGAGGTTGAAGAGCTGCTGCC TTACTCACACGGATACTCCTACACTCAACTCAATTACTTTTGA
AA sequence Show only first row Show all	>Lus10014684 pacid=23165626 polypeptide=Lus10014684 locus=Lus10014684.g ID=Lus10014684.BGIv1.0 annot-version=v1.0 MDIEEGVKDGSLVLIKQGAEARVFESNFVGRRCVIKERFSKKYRHPTLDDKLTLKRLNAEARCMTKARRLGVSTPVLYAVDTVLHSLTFDFVDGAAVKDV LLEFGSKGVVEERLDDIAVQIGDAIAKLHDGGLIHGDLTTSNMLIRNGTNQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRK SSKQWSATFNKLAQGLVVLLSWPKTLVKKWFNIKSKAEEFQADDTTYCYGGGDVQGDQGCCDEDWRSNLTGREAAACSIKKSKTDGIERLSKRRSSDRVR RSKIDIDAAHVTEVNNYRVFVATWNVAGKSPPSHLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLSLIRNTLNTLPGGAITGACRTP SPIPDPLVESDADFEASETRQNVSSFFHRRSFQSLSRSMRMDDGGGEMIQTQSRLDRRFSVCEDRTMMFGQRSNETYDPNFVYGGYSSDDESSPVTAQCS PIDPSIGTEEREGGSYGQQSRYCLVASKQMVGIFLTVWVRSSLKDDVKNMKVSCVGRGLMGYLGNKGSISISMSLQQTSFCFICSHLTSGQKEGDELRRN SDVMEILRKTRFPRVHDGDENSPQTILDHEGFELSNCIVIPIGEGPCRDVQLELRMEKRLGRVFEGWHEGRIYFPPTYKYSNNSDRYAGDDRHLKEKRRT PAWCDRILWYGRGLNQLSYVRGESRFSDHRPVYSVFSAEVESINRSKMKKSMSCSSSSRVEVEELLPYSHGYSYTQLNYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	0	1
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	1.4	0.8694
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	2.4	0.8588
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	6.6	0.7824
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	6.9	0.8421
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10004366 [exp]	7.3	0.8570
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	9.5	0.8439
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	10.2	0.7991
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	10.2	0.7903
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10002522 [exp]	12.0	0.8054
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	13.1	0.8312

Compare expression of checked genes

Lus10014684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.