Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04614 57 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006902 [exp] 195 / 2e-62 AT4G04614 120 / 7e-35 unknown protein Lus10032910 [exp] 129 / 5e-36 ND / Lus10020093 [exp] 122 / 2e-33 AT2G24860 57 / 2e-10 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10042590 [exp] 118 / 3e-32 ND / Lus10043082 [exp] 112 / 3e-30 ND / Lus10025417 [exp] 100 / 2e-25 ND / Lus10006395 [exp] 93 / 2e-22 ND / Lus10015895 [exp] 81 / 1e-18 ND / Lus10033051 [exp] 82 / 2e-18 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213000 [exp] 92 / 8e-23 AT4G04614 139 / 3e-42 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014685 pacid=23165602 polypeptide=Lus10014685 locus=Lus10014685.g ID=Lus10014685.BGIv1.0 annot-version=v1.0 ATGTCGAATACCAAGAAGTGTGACTGCCCCTTCAAACTGTCAGTGAGGTGCCGTGTGGTAGCAAGCGATTGGAAGTTCTGGATTGGCGGTGTAGGCCATA CCAACAATCTTACAAAACCGAAAGGATACTACAATCATTTTTTTGTGCTATATTCTGAAGCTAGCACAGAAATCAATGCCGTTATAAGTGAAGAGAAGAG AGATATTAAGGACATGGTTGCGACTCACACACAACCGAACAAGATCAGTCGGAGTTCAAGCCCCCCAAATTACCCGAATCTTCTTCGCCGAATTACGAAC CCTAACAAGACTACGCTTCCTGCATCGAGACGGAGGAACTCAGTGAGGCCCTGTTCTCCGCCGGAATCTTGGTATCATTACGGGGGGATTCCATGGAGCG ATGATGAAGATAAAGGGTCGTCGGATTCCGATGATGAATCGTCGTCCTCGTCAGCATCGGATTCCGAGAATGAAACTGGCAAAACCAAGACGAAATCCAA GAACGTATCTAGAGGCAAGGCTGCAAAGCGTAGGGGTGGAGTTGTGGACTTTGAGGACCTAAGGCGACACGGATACAAAGGTGCACCGTCACTCCTGAGA ATGCAACCACCTAAAGACGACACTGAGCCGAACTGGACCTGGTCGACAGGGAAAGAACGCAAGGACCCTAAGGAGAAGGGTGAAGAAGAGTCTTCCGAAG AGCGGCAGAAAACAAGGGCTGCTCTAATGGCCGGAGAACAGCTGGCGCACGCTCAGACACGGAAGGAGAAAGAGCAGCTGTCTTTCTCTCAGAAGGAGAA GAGGAACGAGACCTCGGTCAAGCCAGCAGGGGGAAGAGTTACGTCGAGGAGGAGAAGAGATTGCTGA
AA sequence Show only first row Show all	>Lus10014685 pacid=23165602 polypeptide=Lus10014685 locus=Lus10014685.g ID=Lus10014685.BGIv1.0 annot-version=v1.0 MSNTKKCDCPFKLSVRCRVVASDWKFWIGGVGHTNNLTKPKGYYNHFFVLYSEASTEINAVISEEKRDIKDMVATHTQPNKISRSSSPPNYPNLLRRITN PNKTTLPASRRRNSVRPCSPPESWYHYGGIPWSDDEDKGSSDSDDESSSSSASDSENETGKTKTKSKNVSRGKAAKRRGGVVDFEDLRRHGYKGAPSLLR MQPPKDDTEPNWTWSTGKERKDPKEKGEEESSEERQKTRAALMAGEQLAHAQTRKEKEQLSFSQKEKRNETSVKPAGGRVTSRRRRDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04614			unknown protein		Lus10014685 [exp]	0	1
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10002681 [exp]	1.4	0.8276
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	3.5	0.8555
AT1G26750			unknown protein		Lus10016383 [exp]	4.6	0.8232
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	4.8	0.7689
AT5G04000			unknown protein		Lus10042034 [exp]	11.5	0.7907
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	12.0	0.7881
AT5G07670			RNI-like superfamily protein (...		Lus10031164 [exp]	14.7	0.7618
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	16.0	0.7499
AT3G16640		TCTP	translationally controlled tum...		Lus10033959 [exp]	16.7	0.7935
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	17.3	0.7749

Compare expression of checked genes

Lus10014685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.