Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63250 486 / 7e-174 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G22740 446 / 8e-158 HMT3 homocysteine S-methyltransferase 3 (.1) AT3G25900 342 / 4e-117 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006901 [exp] 545 / 0 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10039356 [exp] 456 / 4e-162 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1) Lus10006602 [exp] 400 / 2e-140 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1) Lus10041451 [exp] 347 / 2e-118 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10034320 [exp] 344 / 5e-118 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213100 [exp] 535 / 0 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.002G049800 [exp] 532 / 0 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G083600 [exp] 472 / 2e-168 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.008G155900 [exp] 457 / 1e-162 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1) Potri.010G125200 [exp] 335 / 2e-114 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [flax] [poplar] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10014686 pacid=23165620 polypeptide=Lus10014686 locus=Lus10014686.g ID=Lus10014686.BGIv1.0 annot-version=v1.0 ATGGGACATTCCGGCCACCAACCCTCTCCCTTGATGACTGATCTCCTCCGCCATTCTCGCGGCGTTGCCATCATCGACGGTGGACTCGCCACCGAGCTCG AGCGCCACGGTGCCGACCTCAACGATCCACTCTGGAGCGCCAAGTGCCTCTTGACTTCTCCGCATCTCATCCACGACGTTCATGTTGACTATCTTGAAGC TGGTGCAGATATTATCATCACAGCATCTTACCAGGCTACAATTCAGGGTTTTGAGGCAAAGGGGTACTCTACAGAAGTAAGTGAAAGCATGTTGAGGAAG GGCGTGGAAATTGCTTGTGAGGCAAGGGAAACCTATAACAAAAGATGCCAGGAAGCTCAGCATGACACTGACAGTAGTGGCAAAATCTTGAAGCAGCGGC CCATAATAGTTGCTGCGTCTGTTGGAAGCTATGGGGCTTATTTAGCTGATGGATCAGAGTACAGTGGGATCTATGGTGATGCTGTAAACTTAGAAACCCT GAAGGAGTTCCATCGCAGAAGGCTTCAAATCTTGGCAGAGTCTGGTCCTGATCTCATAGCATTTGAAACCATTCCAAATAAGGTGGAAGCTCAGGCTTAT GCTGAGCTTTTAGAGGAAGAAGGCATAGATATTCCCGCATGGTTTGCTTTTAACTCGAAGGACGGTGTCAATGTTGTTAGTGGTGACTCATGGATTGAAT GTGCCACTATTGCTGAGAGATGCAAGAGAGTGGTGGCTGTTGGGATCAACTGCACCCCTCCTAGGTTCATTCATGGTTTAATATCAGCTATCAAAATGGT GACCACCAAACCAATCCTGATATACCCGAACAGTGGGGAGTGCTATGATGCTGATATAAAGGAGTGGGTGCAAAATACAGGGGTAACTGATGAAGATTTC ATCTCATACGTAAACAAGTGGTGTGATGCCGGGGCTTGCCTTGTCGGAGGCTGCTGTAGAACTACTCCTAATACGATCCGAGCCATTTACAGGACCCTTT CCAGCAGATCAACTGCTTCACCGCTGTAG
AA sequence Show only first row Show all	>Lus10014686 pacid=23165620 polypeptide=Lus10014686 locus=Lus10014686.g ID=Lus10014686.BGIv1.0 annot-version=v1.0 MGHSGHQPSPLMTDLLRHSRGVAIIDGGLATELERHGADLNDPLWSAKCLLTSPHLIHDVHVDYLEAGADIIITASYQATIQGFEAKGYSTEVSESMLRK GVEIACEARETYNKRCQEAQHDTDSSGKILKQRPIIVAASVGSYGAYLADGSEYSGIYGDAVNLETLKEFHRRRLQILAESGPDLIAFETIPNKVEAQAY AELLEEEGIDIPAWFAFNSKDGVNVVSGDSWIECATIAERCKRVVAVGINCTPPRFIHGLISAIKMVTTKPILIYPNSGECYDADIKEWVQNTGVTDEDF ISYVNKWCDAGACLVGGCCRTTPNTIRAIYRTLSSRSTASPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10014686 [exp]	0	1
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029296 [exp]	11.8	0.8308
AT5G52890			AT hook motif-containing prote...		Lus10002064 [exp]	19.6	0.7298
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	44.7	0.7943
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	46.1	0.7765
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10015810 [exp]	70.6	0.7793
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	86.3	0.7754
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10037145 [exp]	93.7	0.7727
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10021711 [exp]	94.3	0.7277
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	105.6	0.7647
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	108.1	0.7744

Compare expression of checked genes

Lus10014686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.