Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03080 879 / 0 kinase interacting (KIP1-like) family protein (.1) AT4G02710 549 / 1e-172 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 520 / 7e-157 kinase interacting (KIP1-like) family protein (.1) AT3G22790 450 / 5e-132 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 146 / 1e-36 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT2G22560 146 / 4e-35 Kinase interacting (KIP1-like) family protein (.1) AT5G58320 138 / 1e-33 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT5G10500 134 / 2e-31 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 130 / 3e-30 Kinase interacting (KIP1-like) family protein (.1) AT2G47920 106 / 2e-25 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006896 [exp] 2661 / 0 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 1263 / 0 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 798 / 0 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 704 / 0 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 306 / 8e-85 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 298 / 5e-82 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 140 / 5e-33 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 137 / 2e-32 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 134 / 3e-31 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049600 [exp] 1139 / 0 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 1130 / 0 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 757 / 0 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 474 / 1e-151 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156200 [exp] 267 / 1e-72 AT3G22790 762 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 159 / 3e-40 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 147 / 4e-36 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.005G147300 [exp] 146 / 3e-35 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 145 / 8e-35 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 140 / 2e-33 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10014687 pacid=23165652 polypeptide=Lus10014687 locus=Lus10014687.g ID=Lus10014687.BGIv1.0 annot-version=v1.0 ATGACTGCACGAGCGAAGTCTACACGTATGTATTCCTGGTGGTGGGATAGCCACATTAGCCCCAAGAACTCAAAATGGCTTCAGGAGAATCTAACAGATA TGGATTCCAACGTAAAAAAGATGATTAAGCTCATTGAAGAAGATGCCGATTCATTTGCAAGGAGGGCGGAGATGTATTATAAGAAACGTCCGGAGCTTAT GAAATTAGTGGAAGAGTTCTACAGGGCATATCGTGCTTTGGCCGAAAGATATGATCATGCAACTGGGGTTATCCGTCATTATCATCTCACCATGGCTAAA GAATTTCCTAACCAGTCCCAGTGTTCGCTAGGCGACGATTCATTGGCGGGTCTTGTTGTAGATTGTGATCCATGCACACCTGATCTTCCATCTCTCCGTG CATTTCTTGATCCAGATGAGTTGGAAAAGGATGATTTGGACGTCTCGCCATCACAATACTATACTGCGAAGGGAAGTGGTGGTTTTACAGATGAAGCTCA GTCTGTCTGCAGCCGAAAGAGTGTGAAACGTTTCACTGATATGTTTGGTTCTGGAGACGTGGGAGTAAGAAAAGGGCTTAATTTTGACAATGCTGGAGAC AAAAAACGAGGGGGTAAAAGCAATGGCAATGTTGAAACGAAAACCCGAGGTCCATCTGACTCGGACCAAATCGCAAAAGCTGAGCAAGAAATATTGACTT TGAAGAATGCTCTTGCTAAATTAGAAGGTGAAAAGGAGGCTGACTTACTTCAATACCAACAAAGTATGGAAAGGTTGACCAGTCTGGAGTCAGAAGTATC TCGTGCAAGAGAAGGTTCTTTGGGACTCAGTGGACGGGCTAGTAAAGCTGAAGCAGAAGTCCAAATGTTGAAGGAAAACCTTGCCAAGGTGGAAGCTGAG AGGGAAACCAACTTTCTCCAGTACCAGCAGTGTCAGGATAAAATATCTAACCTTGAGAAGAACGTATCTTGTGCTGAACAGAACATGGGAGAGCTAAGTG AGCGGGTTAGTAAATCTGAAACTGAAGTTCTTTCACTAAAGGAAGATTTGGCTACAATAGGTGCTGAAAAGGAATCTGCTCTTCTTCAGTATAAACAATG CTTGGAGAGGATATCGGAACTGCAGAGCAAATTATTGAAAGCTGAGGAAGATGTAATGACTTGTAGAAGGCGTGCAGAGATGGCTGAAGAAGAAGTTGAA AGATTGAAGCAGGCACTGGAAAAGTTAACTGAAGAGAATGAAGCTACTGCTGTTCGCTTCCAGCAATGTCTCGATTCAATACAAACTCTGGAGCACAAGC TTAAATGCGCCGAGGAGGAGACGCAAAGGCTGAATTCTGTGATAGACGATGGGGTTTCCAAGTTGAGAGGTGCTGAAGATAAGTGCATCATGTTGGAGAG ATCAAATCAGACCATGACTTCCGAGCTGGAGTCTTTGTCTCAGAAATTGGAAGCTCAAAATATGGAACTTACAGAAAAGCAGAAGGAACTAGGGCAAGTT TGGACTAGTATGCAAGAAGAGCATTTGAGGTTTGTGGAGGCCGAGACTGCTTTTCAAACTTTGCAGGATCTACATTCTCAATCTCAGGAAGAACTGAGGA CTTTGGGTGCAGAGCTTCAGAACAGGGTTCAAATTTTAGAGGGCCTTGAAGCACGTAACCATAGTTTAGAGACTGAAGTTCGGCAGGTTGAGCTTGTAAA CAAGAGCCTGACTGAGGTGAACTTGTCTTCTGCTCTGACGCTGCAGAGCTTAAAGGATGAGATGTCCAGTTTAAGAGAACTTATAGGGAAACTAAAAGCA GAGATTGAACTTCGTGTGGATCAAAGAAATGCTCTTCAGCAGGAAATTTATTGCCTAAAAGAGGAACTTAATGATCTCAACAAGAATCACCACACTATCA AGGAACAGGTTGAGTCAGTCGGATTAAATCCGGAGTGCATAAGCTCTTCTGTGAGGGATATGCAGAATGAAAATGCGAAGCTGAAAGAGGATCATGAGAG AAGCAAAAGTGAGAGATTAGTACTTCTTGAAAAGTTGGAGGTCATGGAAAAGCTAATGGAGACAAATGCTTTCTTGGAGAATTCCTTGTCAGATTTGAAT GTGGAGCTAGATGGAGCAAGAGAGATGGTAAAGAAATTGGAAGCAACCTGTCAGTGTCTCTTGGGAGAGAAGACTACTCTGGTTTCTGAGAAGGCTGCAT TGGTCTGCCAGTTAGAGACTGTAACCAATAACTCGGAGAAGCTCACAGAGGAAAACAACATTCTGGAGACATCCCTCCTTGACGCAAATGCAGACCTTGA TGGGCTAAGAGAGAGAATAAATAGCTTGGAAGCATTATGTCTGTTGCTCGAGAGTCAGAAATCAGACCTCGCTACTGTCAAAGCAAGTTTAACATCTCAG TTGGAAGTCACTCGAAAAAGGATGGAGGATCTGGAGAGAAGTTATGGAAGCTTGGAAGAGAGGCATTCAGCTCTTGAGACTGAGAAAGAATCCATGCTTC TTGAAGTAAAAGAACTGCAGACTTCTTTGGAATCTGGAAAGCAAGAGCATGCTATGCTTGCGAGTCAAAGTGAGTCTCAATTGGCTGGTATGACATCACA TATTAAGTTACTAGAAGAAGAAACACACCGTACAGAGAAAGAATTTGAGGAGGAACTCAACAAAGCCATTACTGCTCAGATTGAGATCTTCGTCCTGCAG AGATGCATACAAGATGTGGAAGAGAACCACTCTTCCCTCTTGCTTGAGTGTCAAGAACTCTTGGCCACATCTAAACGGTATGAGGAAGTCGTTTCAGCAC TCAAGCACGAAAATCTTGAGCAGAAGGAGGAGGTCAGATGTCTTTCCGATCAACTTACAACACTGAGACTGGGGATTTTTAGGATAGCAAAGATTCTTGG AGTTGATACAAATTTGTGGGGAAAAGACGAGACTGGATTTCTGAGCCAACTACTGAAAAGGCTTAACGGAACACAAGAGCTTCTGTTGAATACTCATGAG GAGAATCAGCAGTTATTCATTGAGAAATCTGTTCTTGCTACATTGCTCTCAGGACTGCAGATTGAGGTTGCAAATCTTGTGATGACTCAGCGTATGATAC TGGAAGATGAGAAACGGAAGTTGCGCAAAGAGCTCGAAGACTTGAAGTCCAAGTACGAAGAGGTTGAGGCAAGACTAGCGAGTCAGGAAAGACAGCTTAT CAAGCTATCTGGAGACTTTGGTCAACAGAGCAGGGAGGTGAACAGCATTCATGGCGTGAAAACTGAGCTGGAGAGTGAACTCTGCAGATCCCGTGTCGAA TTGGTGGAGATGATGAATTTGAAGACCAATGTAAGTAACGAGTTGCAGAAGGTAACAAATGATGCTGAACAGTGGGAGTCTCAGGCTGTTATCTTCCTGC GTGAGCTGCAAATTTCGGTTGTCCAGGAGGGACTGTTTGAAGGCAAGGTTCGTGAGCTCATTGAAGCATGCCGGAGCTTTGAAGAAAGTAGTTTCGCCAA AGATACGGAAATAGGACAACTGAAGGAAAGAGTGAACACTTTAGAAAGTGAAAACGGAGATCTGAAGTCCAAACTCAGTTCAACCATTCCGGCCTTCATT TCATTGGTGGATTCAGTAGCATCACTGGAACACCATGCTGTTTCACAAACAACAGTTCCTGAAGCTGAGAATCACCAACAACGAGAGTTGCATGAGGAAA CGTTTGACCAAATGAGTGAAGACCGTAGTGCAGCGTTTTTGGACCTGCAAGAACTACAACAAAGAATCAGAGCAATTGAAAAGGCAGTAATGGAAAAGGA GAGAATGCGCATGCTTGAAAGCATAACTGCAAACAGCAAGCTTGAGGCTGCAATGAGAGAGATCGAAGATTTGAAATCTGGAAGCAGCTTGACCGTCGTT GCAAATGGCGTTCATTCGAAAACAGGATCTGGATGGCGAACACATTCGGAAGATGGAAGTGAAGTGATGACAAAAGACATAATACTGGATCATGACGGTA GCATCCACATGACCGTTGGAAAAGTTCCTTCATCTGGTCGAATGAGACACAGCCGAGATAATCCCTCCGCAGAATCGCTGCGGTTCGAGAAAGAAGTTGT ATCCTACGACAAGCTAGACATCTTCTCAGGCTCCTGTCAAGAATCAATTAACTCAATAAAGGTTCTGGAAAGGCTGGAATCCGACGCTCAGAAGTTGACT AACCTTGAGATCATCGTGCAAGATTTAAGGAAGAAGGTGGAGATCGATGAGAAGAGCAGCAAGAAGAAGAAAGGAAAAGGAATAGAGTACGACATTGTGA AAGAGCAGTTGGATGAATCGGAAGAAACCATCATGGAGCTGTTTGATCAGAACCGGGAGCTGGCAAAGAGCATTGAGAATGAACCAACGGCCATGGATGA TGATGAGAAGAAGAGGAAAATGTCGGAGGAAGCTAGAAGAGGATCGGAGAAGATCGGGAGATTGACGCTGGAGTTACAGAAGCTACAGTTTGTTTTAATG AAGTTGGACAGAGGTGATGAATACAAGAGTGAAGAGGGTAGACGTAGAGTTATGCTGCGTGATTATCTGTATGGACTAAGGACAATGACTCCGAAGAGGA AGAAGAAGTCGCGTTTCTGTTCTTGTATGCAGCAGCCTGCAACAAGAGGGGATTGA
AA sequence Show only first row Show all	>Lus10014687 pacid=23165652 polypeptide=Lus10014687 locus=Lus10014687.g ID=Lus10014687.BGIv1.0 annot-version=v1.0 MTARAKSTRMYSWWWDSHISPKNSKWLQENLTDMDSNVKKMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRHYHLTMAK EFPNQSQCSLGDDSLAGLVVDCDPCTPDLPSLRAFLDPDELEKDDLDVSPSQYYTAKGSGGFTDEAQSVCSRKSVKRFTDMFGSGDVGVRKGLNFDNAGD KKRGGKSNGNVETKTRGPSDSDQIAKAEQEILTLKNALAKLEGEKEADLLQYQQSMERLTSLESEVSRAREGSLGLSGRASKAEAEVQMLKENLAKVEAE RETNFLQYQQCQDKISNLEKNVSCAEQNMGELSERVSKSETEVLSLKEDLATIGAEKESALLQYKQCLERISELQSKLLKAEEDVMTCRRRAEMAEEEVE RLKQALEKLTEENEATAVRFQQCLDSIQTLEHKLKCAEEETQRLNSVIDDGVSKLRGAEDKCIMLERSNQTMTSELESLSQKLEAQNMELTEKQKELGQV WTSMQEEHLRFVEAETAFQTLQDLHSQSQEELRTLGAELQNRVQILEGLEARNHSLETEVRQVELVNKSLTEVNLSSALTLQSLKDEMSSLRELIGKLKA EIELRVDQRNALQQEIYCLKEELNDLNKNHHTIKEQVESVGLNPECISSSVRDMQNENAKLKEDHERSKSERLVLLEKLEVMEKLMETNAFLENSLSDLN VELDGAREMVKKLEATCQCLLGEKTTLVSEKAALVCQLETVTNNSEKLTEENNILETSLLDANADLDGLRERINSLEALCLLLESQKSDLATVKASLTSQ LEVTRKRMEDLERSYGSLEERHSALETEKESMLLEVKELQTSLESGKQEHAMLASQSESQLAGMTSHIKLLEEETHRTEKEFEEELNKAITAQIEIFVLQ RCIQDVEENHSSLLLECQELLATSKRYEEVVSALKHENLEQKEEVRCLSDQLTTLRLGIFRIAKILGVDTNLWGKDETGFLSQLLKRLNGTQELLLNTHE ENQQLFIEKSVLATLLSGLQIEVANLVMTQRMILEDEKRKLRKELEDLKSKYEEVEARLASQERQLIKLSGDFGQQSREVNSIHGVKTELESELCRSRVE LVEMMNLKTNVSNELQKVTNDAEQWESQAVIFLRELQISVVQEGLFEGKVRELIEACRSFEESSFAKDTEIGQLKERVNTLESENGDLKSKLSSTIPAFI SLVDSVASLEHHAVSQTTVPEAENHQQRELHEETFDQMSEDRSAAFLDLQELQQRIRAIEKAVMEKERMRMLESITANSKLEAAMREIEDLKSGSSLTVV ANGVHSKTGSGWRTHSEDGSEVMTKDIILDHDGSIHMTVGKVPSSGRMRHSRDNPSAESLRFEKEVVSYDKLDIFSGSCQESINSIKVLERLESDAQKLT NLEIIVQDLRKKVEIDEKSSKKKKGKGIEYDIVKEQLDESEETIMELFDQNRELAKSIENEPTAMDDDEKKRKMSEEARRGSEKIGRLTLELQKLQFVLM KLDRGDEYKSEEGRRRVMLRDYLYGLRTMTPKRKKKSRFCSCMQQPATRGD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	0	1
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	1.0	0.9144
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	5.1	0.8632
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10001862 [exp]	6.0	0.8437
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	7.4	0.8347
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011010 [exp]	12.6	0.8293
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	15.6	0.8372
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	17.6	0.8135
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	18.3	0.8172
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	24.7	0.8335
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	26.2	0.8258

Compare expression of checked genes

Lus10014687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.