Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16490 193 / 1e-58 ARM repeat superfamily protein (.1) AT1G23030 80 / 9e-17 PUB11 ARM repeat superfamily protein (.1) AT3G54850 77 / 7e-16 ATPUB14 plant U-box 14 (.1) AT2G23140 77 / 1e-15 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G58680 74 / 7e-15 ARM repeat superfamily protein (.1) AT3G54790 74 / 7e-15 ARM repeat superfamily protein (.1.2) AT1G71020 72 / 2e-14 ARM repeat superfamily protein (.1.2) AT3G01400 72 / 3e-14 ARM repeat superfamily protein (.1) AT5G67340 69 / 6e-13 ARM repeat superfamily protein (.1) AT3G46510 68 / 7e-13 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039047 [exp] 248 / 4e-80 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10010499 [exp] 216 / 5e-67 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10017563 [exp] 96 / 2e-23 AT4G16490 198 / 5e-61 ARM repeat superfamily protein (.1) Lus10038812 [exp] 89 / 2e-22 AT4G16490 80 / 2e-18 ARM repeat superfamily protein (.1) Lus10037970 [exp] 77 / 1e-15 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10024899 [exp] 76 / 4e-15 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10033249 [exp] 74 / 4e-15 AT3G54850 340 / 3e-113 plant U-box 14 (.1) Lus10018684 [exp] 72 / 8e-15 AT3G01400 358 / 2e-124 ARM repeat superfamily protein (.1) Lus10022919 [exp] 74 / 2e-14 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010800 [exp] 181 / 6e-54 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.006G015100 [exp] 175 / 1e-51 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.009G165900 [exp] 80 / 1e-16 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.010G226500 [exp] 76 / 3e-15 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 75 / 5e-15 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 74 / 6e-15 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.005G225400 [exp] 74 / 9e-15 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 74 / 1e-14 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.009G029600 [exp] 73 / 2e-14 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G113900 [exp] 73 / 2e-14 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10014691 pacid=23165647 polypeptide=Lus10014691 locus=Lus10014691.g ID=Lus10014691.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCAACGACGGCGAATCTGCTCTCAACAGAAAGCCATCTCCCTCCGCCTCCCCCACCGAAATCAACCGCCAAACCGGCCGCTCTAACAATG CCGACGACAGGAGCTGCTCTTCCTTCACTACCTCCGTCGCCGCTCCCGATCGCCAATGCGCCTCCGCGTTCGTCTCTGAGAACTTGACTGAATCCGTCAC CGCCAGAAGAAATTTCTTCTACGGCTTAGGTAAATCTGAGAAATCCACTGATGTCGTCACCACTCCAGCAGCACTCGAGTTCCTAGATATATCTGAGGCG TCGAGCGATTTCTCTGCCTGTAGTGCCGATATATCCAGCGAATTGCATCGCCTGGCGAGCTTGCCTTCTCCTGGCCGTGGTGGAGATTCGACAGAGCCGG AGCAGCAGGAGCCTTGCCTCGGGAGTGAGAACGTCTCAACGGAGATAATCGAGAGCATTTCGCCGGAGGATCTCCAGCCAGCTTCGTTTTCTTCTGTGGC GGTGAATCGGACAGATAACAGAGCTTTGATTGGGGATCAATCTGGTTATATTCCTGCTTTGATTCCTCTTCTCCGATCTACCGATCCCTGGACTCAGGAG CACGCCGTCACGACTCTATTGAATCTGTCCCTCCATGAAGGTAACAAGGACTTGATCACACACGCCGGAGCAGTTAAATCGTTGGTTCATGTACTGAAAA CAGGAACGGAAACCTCAAAGCAAAGCGCAGCTTGTGCTATGCTCAGTCTGATATCCATAGAAGAGAACATATTAGAGATAACTAGTCTTTTACCACAACT TTCGTAG
AA sequence Show only first row Show all	>Lus10014691 pacid=23165647 polypeptide=Lus10014691 locus=Lus10014691.g ID=Lus10014691.BGIv1.0 annot-version=v1.0 MASLNDGESALNRKPSPSASPTEINRQTGRSNNADDRSCSSFTTSVAAPDRQCASAFVSENLTESVTARRNFFYGLGKSEKSTDVVTTPAALEFLDISEA SSDFSACSADISSELHRLASLPSPGRGGDSTEPEQQEPCLGSENVSTEIIESISPEDLQPASFSSVAVNRTDNRALIGDQSGYIPALIPLLRSTDPWTQE HAVTTLLNLSLHEGNKDLITHAGAVKSLVHVLKTGTETSKQSAACAMLSLISIEENILEITSLLPQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	1.7	0.9444
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	2.8	0.9368
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	3.0	0.9346
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	5.3	0.9322
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	7.3	0.9260
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	7.9	0.9066
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	8.9	0.9313
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	9.9	0.9256
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	11.7	0.9255
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	13.3	0.9096

Compare expression of checked genes

Lus10014691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.