Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 206 / 7e-61 HXXXD-type acyl-transferase family protein (.1) AT5G47980 163 / 8e-45 HXXXD-type acyl-transferase family protein (.1) AT5G47950 162 / 1e-44 HXXXD-type acyl-transferase family protein (.1) AT4G15390 160 / 1e-43 HXXXD-type acyl-transferase family protein (.1) AT1G24430 159 / 3e-43 HXXXD-type acyl-transferase family protein (.1) AT3G30280 155 / 5e-42 HXXXD-type acyl-transferase family protein (.1) AT4G15400 147 / 4e-39 HXXXD-type acyl-transferase family protein (.1) AT5G23970 146 / 1e-38 HXXXD-type acyl-transferase family protein (.1) AT1G24420 136 / 3e-35 HXXXD-type acyl-transferase family protein (.1) AT1G31490 90 / 3e-19 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036078 [exp] 375 / 9e-126 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10026237 [exp] 372 / 6e-124 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 369 / 7e-124 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 355 / 3e-116 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 345 / 1e-113 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10042432 [exp] 223 / 3e-69 AT5G47950 103 / 4e-25 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 200 / 2e-58 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 192 / 9e-56 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 182 / 7e-52 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 214 / 6e-64 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 211 / 1e-62 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 210 / 2e-62 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 208 / 1e-61 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 208 / 1e-61 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 205 / 1e-60 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 198 / 9e-58 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 197 / 2e-57 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 197 / 2e-57 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 195 / 1e-56 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10014695 pacid=23165611 polypeptide=Lus10014695 locus=Lus10014695.g ID=Lus10014695.BGIv1.0 annot-version=v1.0 ATGAATCAATTCACCAAAGGAATCAAAACAATTCTATACGGAAGGAGCATTTGCTCAGAAGCAACAGCTGGGTTTCATGTAAAGGTGACATCAAAATCAA CGATCAAACCATCCTCCCCGACCCTAAACCCAAATCTCCACCACTTCAAGCTTTCTTTCATCGATCAAATCATCCTCCCTGCACTCTACGAGACCTTCGT ACTCTTCTACCCTGCATCCAAACCAACATCATCCGTACTATTAATGCGGCAGCAAATGCGACATTCGCTCTCCGTAACGTTGTCTCACTTCTACCTTCTC GCCGGTAGGATCCCGTCCCAAGAAGGAAACGCATTTCTTCGAGCGGCCGCCCGGTTTTCGTCGGCTGGAATTATCTCAACCATCCACTGCAACGACAGGG GAGCTCTGTTTTTGGAAGCCGAAGCAAACCAGGGTATGCTCCAGTTTTTAAGTAGCGGCTACTCAAGCGCACAGAACCGTGAGTTGGTTTCCCGTTTGGC TCCTCCATTCCCCGACATCATCACGCAAGATGATGACGTGCCTCTTTTGAGCGTCCAAGCGACGGCGTTTAAGTGTGGGGGATTAGCTGTCGGAGTTTCT TTGAATCATCTCGTCGGAGATGGTCACACTTTCGGCATGTTTATGAACAAATGGGCCTCCGTTACCAGGGGAGAAGATTGCTCTGATGCGTATTATGCTC ATGATATGGCTGCTTCACTCTTCCCACCAAATGAAGCCGTTTCCAAATGTTTTTCCACGGCGGTGCAGAAAAGGGCACGGCGGGCTACCTCCAGCATTAT GCTCCAGAGATTCGTATTCAAAGCAGATGCAATATCAGCTCTGAAATCAGAACTCAAAAGCAGTCAAGTGCCTAACCCGAGTCGGACGGTGGCCATCTCC GCACTTATCTGGAAGTGTGCTATGAACGCGGCGACTCCAGTAGTCCGATCGTCTAATGCAATATCCGTTGTCAGCCTTCGACCCAGATTGAAGGTGCCGC TACCAAACTACTCTATGGGGAACATTTTCTGGCCCGTGTCAGCAGGTTATACTAGTAAGTTTCACGGTAGTAGTACTACTGTTGAACTGAAGCAATTGGT ATACTTGCTGAAACAGTCGATAGATGTAGTGGACGGAGAATTTGTGGAGAAATTGACAGGCGAGGAAGGGCACAAGAAGATAATTGAGGATTCGTTGATG ATGAAAGATGGAGTAGAAGCAGTAAGAGAGTACTCGTTTTCGAGTATAGTGAAGATAGGGGTGAATGAGAGTGATTTCGGGTGGGGGAAGCCGATCTGGG CTCCGTTTCTAGGGTTTACAAATGTTGACGTTGGGGATACTGTTTGGCTTATGGAAGCCACCACAGATGGTGCTGTAGAAGCGTGGGTTAGCTTGGATGA AAAGGAGATGGCCATATTACAACGAGATCCCGACCTCCTCGAATACGCCATAGTCAATCCACCAATTATCTCTATCCCAGTGCAAGGATGA
AA sequence Show only first row Show all	>Lus10014695 pacid=23165611 polypeptide=Lus10014695 locus=Lus10014695.g ID=Lus10014695.BGIv1.0 annot-version=v1.0 MNQFTKGIKTILYGRSICSEATAGFHVKVTSKSTIKPSSPTLNPNLHHFKLSFIDQIILPALYETFVLFYPASKPTSSVLLMRQQMRHSLSVTLSHFYLL AGRIPSQEGNAFLRAAARFSSAGIISTIHCNDRGALFLEAEANQGMLQFLSSGYSSAQNRELVSRLAPPFPDIITQDDDVPLLSVQATAFKCGGLAVGVS LNHLVGDGHTFGMFMNKWASVTRGEDCSDAYYAHDMAASLFPPNEAVSKCFSTAVQKRARRATSSIMLQRFVFKADAISALKSELKSSQVPNPSRTVAIS ALIWKCAMNAATPVVRSSNAISVVSLRPRLKVPLPNYSMGNIFWPVSAGYTSKFHGSSTTVELKQLVYLLKQSIDVVDGEFVEKLTGEEGHKKIIEDSLM MKDGVEAVREYSFSSIVKIGVNESDFGWGKPIWAPFLGFTNVDVGDTVWLMEATTDGAVEAWVSLDEKEMAILQRDPDLLEYAIVNPPIISIPVQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	0	1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	1.0	0.9611
					Lus10042300 [exp]	1.7	0.9329
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	2.0	0.9510
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10041160 [exp]	3.3	0.8490
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	3.5	0.9258
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	4.6	0.9052
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	5.5	0.9154
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	8.8	0.9065
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10033237 [exp]	13.1	0.8673
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	20.6	0.8724

Compare expression of checked genes

Lus10014695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.