Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15000 268 / 1e-86 cobalt ion binding (.1) AT3G06790 184 / 6e-56 plastid developmental protein DAG, putative (.1.2) AT1G72530 150 / 1e-43 plastid developmental protein DAG, putative (.1.2) AT2G33430 144 / 4e-41 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 144 / 1e-40 plastid developmental protein DAG, putative (.1) AT1G32580 140 / 3e-39 plastid developmental protein DAG, putative (.1) AT1G11430 139 / 1e-38 plastid developmental protein DAG, putative (.1) AT1G53260 132 / 3e-36 unknown protein AT4G20020 112 / 3e-27 unknown protein AT5G44780 96 / 3e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032618 [exp] 432 / 1e-150 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10043130 [exp] 416 / 1e-143 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10032619 [exp] 309 / 1e-104 AT3G15000 223 / 3e-71 cobalt ion binding (.1) Lus10016825 [exp] 186 / 2e-56 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10011789 [exp] 141 / 1e-39 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 141 / 2e-39 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 135 / 3e-37 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10018398 [exp] 132 / 7e-37 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10036589 [exp] 102 / 8e-24 AT4G20020 271 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112200 [exp] 269 / 8e-87 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 263 / 2e-84 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.010G007200 [exp] 182 / 7e-55 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.008G169900 [exp] 143 / 2e-40 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 140 / 4e-39 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.011G032900 [exp] 137 / 2e-38 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.003G015100 [exp] 103 / 4e-24 AT4G20020 239 / 2e-74 unknown protein Potri.010G237200 [exp] 70 / 5e-13 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 69 / 2e-12 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G218800 [exp] 67 / 7e-12 AT4G20020 182 / 8e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014696 pacid=23165574 polypeptide=Lus10014696 locus=Lus10014696.g ID=Lus10014696.BGIv1.0 annot-version=v1.0 ATGGCAGCGGCTAGAATTCCGATGATTCTTCTCCGGCGGGCGACAACTACTTCCGTCTTCCGTTCCGTACGCCCTCTCTACGCTGCCGCCTCTCAATTCA CGAATCTATCTTCCCCGTCTACCGCCGGTCGCTGCTTCGCTACCCGTGCCACTTCGTCCTCGCTTAACGATCCTAGCCCTAACTGGTCGAATAGGCCCCC GAAAGAGACCATCTTGCTTGATGGGTGTGATTTTGAACACTGGCTGGTGGTGATGGAGAAACCACAGGATGATCTTACCAGGGATGATATCATAGATAGC TACATCAAAACCCTAGCTCAGGTTGTCGGCAGTGAGGAGGAAGCGAGGATGAAAATCTATTCCGTTTCCACAAGGCATTACTTTGCCTTCGGGGCACTTG TGTCTGAGGAGCTTTCTTACAAGTTGAAAGAATTGCCTACAGTTCGTTGGGTTCTCCCAGATTCATATCTGGATGTAAAGAACAAAGACTATGGAGGGGA ACCATTCATTAATGGCCAAGCTGTTCCATATGATCCCAAGTATCATGAGGAATGGGTAAGAAATAACGCCAGAGCAAATGAGAGGAATCGACGCAATGAC AGACCGAGGAACTTTGATCGGTCACGCAACTTTGACAGAAGAAGGGAGAACATGCAAGGTCGGGATTTCCAGAATCCTCCTCAGGCAGCTCCTCGTATGG GTAATCAAGCAGTGCAGAATCCTGGATTCCAGCAGAACATGGGCAGCTCAGGTGCGCCACAGCCGCAGCAGCAGCAGCAGCCACAATATCCACCTCCACG TAACATGGCAGGCCCAGGTGGACCTCCACAACAACCACCTCAGTACCCTCAAAGAGGACCTGGAGGACCTCCACCACCAAACCAACAGATGGGAGGATGG CCACGGAACAATGATCAAGGATATGCCCCACCTCCTCCTACGCCACCGCCAAACACGTATGGAGGAGTGCCACAGGGAAACAATATGGGAAGGATGCCTC CACCGAACATGGTAGGAGGACCGGGGGATAATTCTGGTTGGTCGAACGGTGGGCAGGGAAACTTTCAGAATGGGCCAAATTATGGAGGTGTGCCGCCTTA CCAAGGCGAGCAGCAAAGCTATCCACAGAATGGCTACCCTTCAAACAGGGACGGCAACTTGCCTCGTTACTGA
AA sequence Show only first row Show all	>Lus10014696 pacid=23165574 polypeptide=Lus10014696 locus=Lus10014696.g ID=Lus10014696.BGIv1.0 annot-version=v1.0 MAAARIPMILLRRATTTSVFRSVRPLYAAASQFTNLSSPSTAGRCFATRATSSSLNDPSPNWSNRPPKETILLDGCDFEHWLVVMEKPQDDLTRDDIIDS YIKTLAQVVGSEEEARMKIYSVSTRHYFAFGALVSEELSYKLKELPTVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRND RPRNFDRSRNFDRRRENMQGRDFQNPPQAAPRMGNQAVQNPGFQQNMGSSGAPQPQQQQQPQYPPPRNMAGPGGPPQQPPQYPQRGPGGPPPPNQQMGGW PRNNDQGYAPPPPTPPPNTYGGVPQGNNMGRMPPPNMVGGPGDNSGWSNGGQGNFQNGPNYGGVPPYQGEQQSYPQNGYPSNRDGNLPRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	0	1
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Lus10017365 [exp]	10.6	0.8238
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	11.8	0.7956
AT4G36750			Quinone reductase family prote...		Lus10024032 [exp]	12.5	0.7279
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	16.6	0.7948
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	19.5	0.7750
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	23.0	0.7746
AT1G16160		WAKL5	wall associated kinase-like 5 ...		Lus10013143 [exp]	23.9	0.8028
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007874 [exp]	25.5	0.7974
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	26.9	0.8028
AT1G32420			F-box and associated interacti...		Lus10011210 [exp]	29.4	0.7008

Compare expression of checked genes

Lus10014696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.