Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19840 158 / 9e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000493 [exp] 372 / 8e-127 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215200 [exp] 216 / 2e-66 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G047875 [exp] 73 / 2e-15 AT5G19840 54 / 8e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014697 pacid=23165651 polypeptide=Lus10014697 locus=Lus10014697.g ID=Lus10014697.BGIv1.0 annot-version=v1.0 ATGGAAGAGATTAATCAGCTGAAAATCAATGTGTTCGAGCAGCCTCCTTCGGCAGCGGTATTCGCATCTGAAATCGAGTCGAAGAATGTTCCGGCGGTCT TCACTGGGTGCGTTAAGAATTGGAGAGCTTACACCACTTGGAATCCTGCTAATGGAGAAGAGCTGGTTTTTTGGACTAAGTTTTGCGGACCTATGGTTTC CATTATGAATTCCGAGGACAAAAATAAAGTTCAACTCGAAGCTCTTAGGAATGACATTCAAGTGAACCAAGTCCTGGATGATCCATCATTAATCAATACA AGGAAAACGGAGAGATACTCATCTGAGTTGATGGGTAATGGGAAAACAGATTGCAGTCACTTGCACTTGGACCTGACTGATGGAAGTCGGGAGTTACCAC AGAAGAACCAGCGGCAAGAAGTTAAACTGCATCCGTTGGAACAATATACAGTTCAGGCCCTTCATGAACTGGTTTCGTTAGTACATAACCATGTGAACCC TGATCAAAGTCGAGACAACAAAATTGTAGTTGCCAACTTATATTTCCTAGAAGACGATCCAGTTGCTAAAATATTGTGGAGCCTTTATCCACAAACTCTC AGCAAGGTTTTCCTTGCAATGAATTGTTTCCCAAGAACCTTGGAGGCTCTAGTACTACACTTGCTTTCTCCGGTAGGAGCTGAAGTCCTTACACGGAAGT TTGAAGAGATGGACCAGCAGTCCACAGAAGAAAACCGAAACAAATTCTACGAGCAGTTCTATAGTGCGTTTGATGACCAATTTGCTGCGATGGATGCAAT ACTGAATGGGAAAGAATCATTTGCTCTCCAGGCTTTCAAGGACACGCTGGAAAAATACATCGGTGTCCCTCCCGACGTTCATGGCTAA
AA sequence Show only first row Show all	>Lus10014697 pacid=23165651 polypeptide=Lus10014697 locus=Lus10014697.g ID=Lus10014697.BGIv1.0 annot-version=v1.0 MEEINQLKINVFEQPPSAAVFASEIESKNVPAVFTGCVKNWRAYTTWNPANGEELVFWTKFCGPMVSIMNSEDKNKVQLEALRNDIQVNQVLDDPSLINT RKTERYSSELMGNGKTDCSHLHLDLTDGSRELPQKNQRQEVKLHPLEQYTVQALHELVSLVHNHVNPDQSRDNKIVVANLYFLEDDPVAKILWSLYPQTL SKVFLAMNCFPRTLEALVLHLLSPVGAEVLTRKFEEMDQQSTEENRNKFYEQFYSAFDDQFAAMDAILNGKESFALQAFKDTLEKYIGVPPDVHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10014697 [exp]	0	1
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	2.0	0.8867
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	4.5	0.9011
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	5.5	0.8940
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10043099 [exp]	8.7	0.8574
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10013038 [exp]	10.4	0.8743
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	13.3	0.8943
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	14.4	0.8589
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	16.2	0.8707
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	17.2	0.8435
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	18.5	0.8694

Compare expression of checked genes

Lus10014697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.