Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22830 308 / 2e-102 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G51910 274 / 7e-91 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT2G26150 259 / 4e-84 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G63350 246 / 1e-79 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT4G17750 233 / 5e-72 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 230 / 4e-71 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G16820 229 / 1e-70 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 224 / 6e-69 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G43840 204 / 1e-63 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT5G03720 189 / 4e-56 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000492 [exp] 573 / 0 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 401 / 3e-139 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 269 / 4e-87 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 260 / 4e-84 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000312 [exp] 241 / 1e-75 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 241 / 1e-75 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 237 / 8e-74 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 235 / 5e-73 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10013797 [exp] 228 / 6e-72 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214800 [exp] 380 / 2e-131 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 380 / 5e-131 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 327 / 3e-110 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 318 / 3e-107 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 239 / 1e-75 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.001G138900 [exp] 241 / 7e-75 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 239 / 4e-74 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.006G148200 [exp] 217 / 9e-66 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.013G079800 [exp] 213 / 2e-64 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.014G141400 [exp] 201 / 2e-60 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10014698 pacid=23165570 polypeptide=Lus10014698 locus=Lus10014698.g ID=Lus10014698.BGIv1.0 annot-version=v1.0 ATGAACAATTTCTTCACCGTGAAGGAAGAGTACCCCGGTGACACGCCGGCGATGACGACGGCGATGACGACGGTGGTGCCACCGCCGCAACCGATGGAAG GTCTCCACGACGCTGGACCTCCTCCATTTCTCACTAAAACATTCGAGATGGTGGACGATCCGTTCACAAACCACGTCGTCTCCTGGAGCAGAGGAGGCAC AAGCTTCGTCGTCTGGGATCCTCATTCCTTCTCTACAAACCTCCTCCCTCGCTTCTTCAAGCACAACAACTTCTCCAGCTTCGTACGCCAGCTCAACACT TACGGATTCCGAAAGATCGACCCAGAGCGATGGGAGTTCGCCAATGAGGAATTCCTTCGAGGCCACAAGCATCTCCTGAAGAACATTCGGCGAAGGAAAG CTCCTCTTCCTCCTCCTCCTCCTTCTCTTTCCCCTTATCCTTCTCCTTCTCAATCCTTCTACGCTACAATTCCAAATCAAGCACCGGGGACCAGCGCCGT CGAGCTTGGCCAATTCGGTCTCGACGGAGAACTCGGCCGATTGAAGCGAGACAAACAGGTGCTGACGATGGAGCTAGTGAAGCTCCGGCAGCAGCAGCAG AGTACGAAAGCTTACGTGACGGAGCTGGAGCAGAGGTTACAAGGAACGGAGTGTAAGCAACAGCAGATGATGCGGTTTTTGGCTCGGGCGGTTCAGAACC CGGCGTTCCTGCATCAGCTGGCGCAACGGAAGGAGAAGAGGAAAGAGCTGGAGGAAGCGCTGAGCAAAAAGCGGAGGCGACCGATTGAGCAAAGGAGAGG TAAGAATCTGGTTGGAGAATCGAGCAATTGGAGGCAGGTGATCAAACCGGAGCCGGTGGAGTACGGAATCGGATCGCCGTTTGGATTGACGGAGCTGGAG GCTCTGGCGCTGGAAATGCAAGGGATAGGGAAAGGAGTTAGGCAGGAGAGAGAGGAGGAAGCGGATGGGGTAGAAGAGGATGGAGAGGAGCTGGAAGCAA CTTCGGATCGGGAGCTAGACGACGGATTCTGGGAAGAACTGCTGAATGAGAGTACCGGCGGCGTTGGGGAAGATCAGGAAGACGTCAACACCTTGGCAGA ACAGTTAGGTTACTTGAGCTCTTCGAGTCCTAAATAG
AA sequence Show only first row Show all	>Lus10014698 pacid=23165570 polypeptide=Lus10014698 locus=Lus10014698.g ID=Lus10014698.BGIv1.0 annot-version=v1.0 MNNFFTVKEEYPGDTPAMTTAMTTVVPPPQPMEGLHDAGPPPFLTKTFEMVDDPFTNHVVSWSRGGTSFVVWDPHSFSTNLLPRFFKHNNFSSFVRQLNT YGFRKIDPERWEFANEEFLRGHKHLLKNIRRRKAPLPPPPPSLSPYPSPSQSFYATIPNQAPGTSAVELGQFGLDGELGRLKRDKQVLTMELVKLRQQQQ STKAYVTELEQRLQGTECKQQQMMRFLARAVQNPAFLHQLAQRKEKRKELEEALSKKRRRPIEQRRGKNLVGESSNWRQVIKPEPVEYGIGSPFGLTELE ALALEMQGIGKGVRQEREEEADGVEEDGEELEATSDRELDDGFWEELLNESTGGVGEDQEDVNTLAEQLGYLSSSSPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014698 [exp]	0	1
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10042672 [exp]	13.6	0.7571
AT3G52520			unknown protein		Lus10029420 [exp]	15.5	0.7877
AT2G16460			Protein of unknown function (D...		Lus10041812 [exp]	26.4	0.7519
AT5G13825			unknown protein		Lus10000042 [exp]	29.3	0.7512
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002774 [exp]	32.0	0.7503
					Lus10002411 [exp]	36.3	0.7501
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012610 [exp]	36.5	0.7424
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031007 [exp]	37.8	0.7481
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021348 [exp]	41.6	0.7135
					Lus10019564 [exp]	42.5	0.7474

Compare expression of checked genes

Lus10014698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.