Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63340 360 / 3e-112 Protein phosphatase 2C family protein (.1.2) AT3G63320 199 / 1e-57 Protein phosphatase 2C family protein (.1) AT2G30020 95 / 9e-21 Protein phosphatase 2C family protein (.1) AT5G57050 89 / 5e-19 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT4G26080 86 / 1e-17 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G72770 86 / 2e-17 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G07160 83 / 9e-17 Protein phosphatase 2C family protein (.1) AT1G17550 82 / 4e-16 HAB2 homology to ABI2 (.1) AT2G40180 79 / 2e-15 ATHPP2C5 phosphatase 2C5 (.1) AT5G51760 76 / 2e-14 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000491 [exp] 863 / 0 AT3G63340 1054 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026381 [exp] 89 / 9e-19 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 88 / 2e-18 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10025000 [exp] 77 / 2e-14 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10026447 [exp] 77 / 2e-14 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10026239 [exp] 72 / 8e-14 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 72 / 8e-14 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 72 / 9e-14 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 72 / 2e-13 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214650 [exp] 476 / 1e-155 AT3G63340 1166 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G214500 [exp] 134 / 3e-34 AT3G63340 304 / 3e-94 Protein phosphatase 2C family protein (.1.2) Potri.010G187000 [exp] 88 / 2e-18 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 87 / 4e-18 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.009G073000 [exp] 87 / 6e-18 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.008G070400 [exp] 85 / 2e-17 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.013G099400 [exp] 85 / 2e-17 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.001G278500 [exp] 84 / 3e-17 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) Potri.006G224600 [exp] 82 / 5e-16 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.018G060300 [exp] 80 / 2e-15 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10014699 pacid=23165664 polypeptide=Lus10014699 locus=Lus10014699.g ID=Lus10014699.BGIv1.0 annot-version=v1.0 ATGCATGTTTCGTACTTAGGTGGGGACGTGGCGAAACCTCAGGCGCCACTGGTTTTATTGACATCACCAAAACAAGCTAATTCAGCTTCTTTGTTAAATA AATACAGGGAGCAGATTCGTAATGGAGTAGTTTCAAATGCTAGAAATTATAGAAGCATTAGATCAGCAACATCTATGGGAGTGAAGCGATTTCACTTTAA GGAATTAACTCAAGATCATCATCCCGATAGAGAGGACGAAAAGATTCGAGTGGAAGCTGCTGGTGGATACATACTTGAGTCAAGTGGTGTGGCTCGTGTA AATGGCGAGCTGGCTGTGTCCCGAGCTATTAGGGATTTCCAGCTCAGAAGTTATGGTGTCATATCATTACCGAAAGTGACAAATTGGCAACCTGTCACTG CAAGTGATAGCTATCTGGTGGTTGCATCTGATGGTGTGTTTGAGAAATCGGGATCTCAAGAAGTTTGTGATATACTGTGGGAAGCCCCAAATTGCGTGGT TGGGAAACCTGAGCTATCTTCTTCTCGCTCATATTCTCTAGCTGAGTGTTTGGTTGAAACAGCATTTGTTCAGGGCAGTATGGATAACATGGCAGCCGTG GTGGTTCCATTAAGAACGATTATTGTTTCTGAAACTTTGCTGAAAGAAAGCTGTGCTGAGAAAGAAGACATAAATTGTTCATCTACTGTCGTAACAAAGT TTGTGCATGAAGAATCAGCTCAAGACTTGACTTCTGACTTGGCACGCTTGGAGCACAGGCTTCCTCTCATTACAGAGTTTAGCCGATTATTGGTTGAAGC CAAATATGCTAATCTTGGCTGTTATTATCTGGACGAGAATCTCAACAATTTCACAGATACGTGGATAGCTCAACATACAGTCTCAAAACGTTGTAGTAAT GACCTACCTCAGGCCTTACCTGAAGCATTAGATCACCATGATGAGGATGGATTTAAAGGTCAATGCCCTAATCCCGAGGGCTTTTCCAGTTTCCTTGGTT TGGTGGAATCTATTCCTTTCCCTGATTCTGGTTCAAGTTATGTCTCAACAGATGAGGTAATGCCTGATTTGAGGTATCTGCTAAAGAAACGATTTGGCCG TGGAGCATATGGTGAAGTATGGCTTGCTTTTCACTGGAATTGTCATCAAGAGACTAATGGTTCAGATTCTGTAATAAAGAATGAAAATATCGCATCTGAT CATGGTCAGTCTGCTGGCTCATCTGATGGTGAGATGTTCATTCTCAAACGAATAATGGTGGAGAGAGGACCCGCTGTATACCTAAGTGGTCTAAGGGAGA AATATCTTGGTGAAATGTTCTCTAACTCCTCCAAGAGTGTACAAGGGATATCAGATGCATATGCTGGATCATCCTTTTCTGAGGATTTTGAATCAGATTT TGACGACCCATCCAAAATGAGTGAATCATTTTATGGATTTGGAACTCAATGGGTCCTCAACAGGGCTGAACAAACTTATGAGTATAGTCCTCCTGAAGCT TTTCTCAATGCTAGCTGGCATCACGAATCAACAAGCAGGAGATTTAACATTGGCTGGTATGATATGTGGAGTGTTGGTGTTGTAATTTTAGAGTTGATCC TGGGGTCACCAAGCGTTTTCCAGGTAGATGCCAGAACTCATGCTCTTCTCGATCCACACGTTGATGGTTGGAATGAAGACCTGAAGGAGCTTGCTTACAA GTTTCCAGACGTGTGGGCTTTGCGGTTAGTGCGTCAACTACTACTCTGGGATCCTGATGACCGGTTGAGCGTCGACGAAGCATTGGACCATCCCTATTTC AAGCGCTCCACCTAA
AA sequence Show only first row Show all	>Lus10014699 pacid=23165664 polypeptide=Lus10014699 locus=Lus10014699.g ID=Lus10014699.BGIv1.0 annot-version=v1.0 MHVSYLGGDVAKPQAPLVLLTSPKQANSASLLNKYREQIRNGVVSNARNYRSIRSATSMGVKRFHFKELTQDHHPDREDEKIRVEAAGGYILESSGVARV NGELAVSRAIRDFQLRSYGVISLPKVTNWQPVTASDSYLVVASDGVFEKSGSQEVCDILWEAPNCVVGKPELSSSRSYSLAECLVETAFVQGSMDNMAAV VVPLRTIIVSETLLKESCAEKEDINCSSTVVTKFVHEESAQDLTSDLARLEHRLPLITEFSRLLVEAKYANLGCYYLDENLNNFTDTWIAQHTVSKRCSN DLPQALPEALDHHDEDGFKGQCPNPEGFSSFLGLVESIPFPDSGSSYVSTDEVMPDLRYLLKKRFGRGAYGEVWLAFHWNCHQETNGSDSVIKNENIASD HGQSAGSSDGEMFILKRIMVERGPAVYLSGLREKYLGEMFSNSSKSVQGISDAYAGSSFSEDFESDFDDPSKMSESFYGFGTQWVLNRAEQTYEYSPPEA FLNASWHHESTSRRFNIGWYDMWSVGVVILELILGSPSVFQVDARTHALLDPHVDGWNEDLKELAYKFPDVWALRLVRQLLLWDPDDRLSVDEALDHPYF KRST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	0	1
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	1.0	0.9281
					Lus10008674 [exp]	1.7	0.9061
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	2.4	0.8998
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	3.2	0.9103
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	4.0	0.9036
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	5.5	0.9019
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	5.7	0.8782
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10034999 [exp]	5.8	0.8696
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10012927 [exp]	7.7	0.8744
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	11.1	0.8347

Compare expression of checked genes

Lus10014699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.