Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14720 181 / 4e-54 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G14713 170 / 9e-50 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT5G20900 55 / 1e-08 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT1G19180 52 / 1e-07 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G74950 51 / 4e-07 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT3G43440 47 / 9e-06 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT1G72450 46 / 2e-05 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) AT1G17380 45 / 3e-05 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT1G70700 45 / 3e-05 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT3G17860 42 / 0.0003 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000490 [exp] 609 / 0 AT4G14720 184 / 8e-55 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10013166 [exp] 53 / 1e-07 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10027648 [exp] 51 / 6e-07 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10039911 [exp] 51 / 6e-07 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10008129 [exp] 49 / 2e-06 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10011929 [exp] 49 / 2e-06 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10002576 [exp] 48 / 3e-06 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10027639 [exp] 44 / 6e-05 AT5G20900 107 / 8e-29 jasmonate-zim-domain protein 12 (.1) Lus10001803 [exp] 44 / 6e-05 AT5G13220 100 / 1e-26 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048500 [exp] 298 / 2e-99 AT4G14720 95 / 6e-22 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.005G214300 [exp] 290 / 8e-96 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.003G068900 [exp] 62 / 1e-10 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.006G217200 [exp] 57 / 3e-09 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.006G139400 [exp] 56 / 1e-08 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.018G047100 [exp] 52 / 2e-07 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.001G166200 [exp] 50 / 7e-07 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.001G062500 [exp] 48 / 2e-06 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.008G133400 [exp] 49 / 3e-06 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.003G165000 [exp] 47 / 6e-06 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10014700 pacid=23165588 polypeptide=Lus10014700 locus=Lus10014700.g ID=Lus10014700.BGIv1.0 annot-version=v1.0 ATGCAGCCTGCTGTCGGCGATACCGCTTCCCGTTCCCCGCTCGACAAGCCTCTCCACCAGCTAACCGAAGATGACATTTCTCAGCTCACTCGAGAAGATT GCCGCAGATTCCTCAAAGAGAAAGGGATGAGAAGGCCGTCGTGGAACAAATCGCAGGCAATCCAGCAGGTGATCTCGCTCAAAACCCTACTTGAACCGCC GCCGGAGTCCGAAGACGGCCAAGCTCCACGGAGGCGCTACATTCCCCGTACGGATAACACGTATCGTGCCCCTGCAACTCCAAATCCTGCTGTTTCAGTG AAAGTATCCGCCGTTGATACTCCGATCTCTGCGCCTCCCGATGATTCTGCGCCCTATCGCCGGCATGATCCTCCTCTGAATGATTTTCCGGCGAGTAACT CTGCATTGGACTTTCTTCACTGCCCATTAAACCATCTGTTGTTGCGAATGCTTAGCATGAGTACAGGTCAAGTTAATGAGCAACATGGGCAGATGACAAT ATTTTACTGTGGGAAGGTGAACGTCTATGATGATATGCCGAGAGATAAGGCTCGAGTTATTCTGCAGCTTGCTGCAAGTCCTGTCCCCTTGACACAGGAT GGCGCATCTGATGCTAGTCAGCCTGCATGGCCCTTCCCCGGTCAAACGGAAACTCATGGTGCTAAAGCAGCTCAAACGTCATCAGCTCTGCCCTTTTCTT CCCTGCAAACTGAAGGCCCGGCAAGCAGAAAAGCGTCCGTGCAGAGATACCTTGAGAAACGGAAAGACAGGTTCAAGCACAAGAGAAAAGTGGCAATGCC TACATCAGCTAATTTAGACATCTACTTAAACAACCGGGTGGGCGATCAAGTCTCAAATGAACCATGGGGCTCAACTGATACTTGCTCCTCTCCTCAATCT ATACATCCCCAGCGCTGCATTTCTGCTGAGAACACAGCAATGCACTCCATTCTCGCTGCTGATCTTGCTCCCAAAGGTTTATCCGTTTTCTGTGTTAGCT TTTCAACTTGCTGTTTGAACAAACTTGACAATGCATATTCACGGAACCCTTGCGTCATTCCAATTTGGCCTGACGAGGACTGTATTTTCCAATTTTACTG TTTTGTGTTCAATGCTGAAGAAACTGCATATTGA
AA sequence Show only first row Show all	>Lus10014700 pacid=23165588 polypeptide=Lus10014700 locus=Lus10014700.g ID=Lus10014700.BGIv1.0 annot-version=v1.0 MQPAVGDTASRSPLDKPLHQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKTLLEPPPESEDGQAPRRRYIPRTDNTYRAPATPNPAVSV KVSAVDTPISAPPDDSAPYRRHDPPLNDFPASNSALDFLHCPLNHLLLRMLSMSTGQVNEQHGQMTIFYCGKVNVYDDMPRDKARVILQLAASPVPLTQD GASDASQPAWPFPGQTETHGAKAAQTSSALPFSSLQTEGPASRKASVQRYLEKRKDRFKHKRKVAMPTSANLDIYLNNRVGDQVSNEPWGSTDTCSSPQS IHPQRCISAENTAMHSILAADLAPKGLSVFCVSFSTCCLNKLDNAYSRNPCVIPIWPDEDCIFQFYCFVFNAEETAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	0	1
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002517 [exp]	2.6	0.7288
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	3.2	0.7693
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10004490 [exp]	5.5	0.7802
AT3G24820			BSD domain-containing protein ...		Lus10025929 [exp]	6.9	0.6950
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	11.2	0.7333
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	11.5	0.7200
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	12.6	0.6988
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	12.7	0.6956
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	13.3	0.7614
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10006979 [exp]	14.5	0.7463

Compare expression of checked genes

Lus10014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.