Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 182 / 2e-49 Ankyrin repeat family protein (.1) AT5G35810 166 / 1e-45 Ankyrin repeat family protein (.1) AT5G04730 162 / 3e-42 Ankyrin-repeat containing protein (.1) AT5G04700 161 / 1e-41 Ankyrin repeat family protein (.1) AT3G54070 148 / 1e-37 Ankyrin repeat family protein (.1) AT5G04690 146 / 7e-37 Ankyrin repeat family protein (.1) AT5G04680 131 / 1e-31 Ankyrin repeat family protein (.1) AT4G03490 59 / 1e-08 Ankyrin repeat family protein (.1.2) AT5G35830 57 / 1e-08 Ankyrin repeat family protein (.1) AT4G14390 56 / 8e-08 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000489 [exp] 828 / 0 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10003282 [exp] 529 / 1e-179 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10016672 [exp] 383 / 3e-122 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10000916 [exp] 233 / 5e-69 AT1G03670 52 / 1e-06 ankyrin repeat family protein (.1) Lus10019887 [exp] 239 / 2e-68 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10014030 [exp] 189 / 5e-51 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10027721 [exp] 181 / 1e-48 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10038357 [exp] 179 / 2e-47 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10035567 [exp] 127 / 3e-31 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048832 [exp] 787 / 0 AT3G18670 195 / 2e-53 Ankyrin repeat family protein (.1) Potri.002G048666 [exp] 486 / 4e-159 AT5G04700 181 / 3e-47 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 331 / 9e-104 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1) Potri.005G057900 [exp] 255 / 2e-75 AT3G18670 431 / 4e-144 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 253 / 3e-74 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.011G019750 [exp] 251 / 7e-73 AT3G18670 135 / 3e-33 Ankyrin repeat family protein (.1) Potri.008G023700 [exp] 244 / 9e-72 AT5G04700 371 / 8e-120 Ankyrin repeat family protein (.1) Potri.008G023101 [exp] 243 / 3e-70 AT5G04700 380 / 9e-122 Ankyrin repeat family protein (.1) Potri.014G057950 [exp] 240 / 6e-70 AT3G18670 176 / 2e-47 Ankyrin repeat family protein (.1) Potri.011G019200 [exp] 238 / 3e-68 AT3G18670 137 / 1e-33 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014701 pacid=23165568 polypeptide=Lus10014701 locus=Lus10014701.g ID=Lus10014701.BGIv1.0 annot-version=v1.0 ATGGACGGCGGCGGCATCGAGACCAACCACTTAGACGCCATCAGGAGAGACTTATTCCAGTCGGCGATGAAAGGCGATTGGCGAAGAGTGCTCCACACCT ACGAGACGGAACCATCGGCCTACGCAGCCCAGATCACCAAGCCGCTCGACACCGCACTGCACATAGCGGTTTCGGATGGGCAGGAGCATATCGTCGAACA GTTGGTGGACGTAATGTACTCCAACAGAGCAGAGGAGGCAGAGGCGGCGCTGAGGGTGAAAAACGACCACGGGAACACTCCGCTCCATATCGCCGCCACG CTGGGGAGCCTCGCCATGTGCGTGTGCATCGCCGAGAAGGACCGGTCGGTGGTCGGAGTACGGAACGAAGACAGCGAGACGCCGCTGTTCCTGGCTGCCG CCCACGGCAAGAAGAAAGCGTTCCTCAGTCTGCATCGGATTTGTGGAGCGGAGGAGTGCCGGCAGCATTATAGAGGGAAGGACGGCGAGACCATCCTCCA TGCCGCCATCGCCGGCGAATACTTCGATTTGGCGTATCAGATCATAATATTGTACAGAGAACTAGTAAATGCCGTGAACACGCAGGGAAGAACTCCTCTG CATCTGTTGGCTAGTAAACCTGGTGCGTTTAGGAGCGGCAGCCATCTTGGAGGATATGACCAACTCATTTACTATTTGAGGAGGAGATTCAGAGCGCCAA AATGTCAGTTGGAAGATACAGAGAACCAGAGACCATCATCGAGACATGTTGAAGGAACACTAATCAGAGCTTTTTCACAACTTATACTAACTGATCAAGG GAGTCAACAAGTACTTCCTTTGAATTACGACACATGCTTCGAGTTCGTGAAGCTTGCGTTCAAGGCATTGTTCATCATCCTCGGATACGGATCGACTCAA TTGGGAAAGTTACGGATCAAAAAGGAAAAGCACGCTTGGTCAGTACAAATAATGAACGAGCTTTTGAAAGATGCTGAAACCTATGTTTACGAGTACAACG GGAGGAGCCCCCACCCCATCGAAACGCCTCTCGAGTTTACCGACGTCTTGTCCGTGGGAGCAGGGGAAGATCCTAACAAGCACAAGCACGTTGAAACTAT TGAGACGCCTATACTTATAGCGGCGAAGAACGGAATCACCGAAATAGTAGAGAAGATTCTGGATCTGTATCCAGTGGCTATCAATGACATGAACATGCAG AAGAAAAACATCGTACTGTTAGCAGTAGAGAACAGGCAGTCTCACATTTACGAAAGATTGCTGAAGAGAATAGTTATGAGAGAGAGCGTGTTCCGGAAAG TCGACCACCGCGGGGATAGCGCATTACACCTCGCCGCCGCACTAGGCCAGCACAAACCCTGGCGGATCCCCGGCGCTGCACTCCAAATGCAATGGGAAAT CAAGTGGTACGAGTTTGTGAAGAACTCGATGCCGTATAACTTCTTCATCAAGCACAACAAGGACGGCAATAGTCCACGCGACATCTTCTCCGAACAACAC GCCGATCTGGTACGCAGCGGTGGCGAGTGGCTTACCAACACGTCGGAGTCATGCTCGGTGGTGGCGGCGCTAATAGCCACCGTGGCATTTGCCACGTCGT CCACTTTCCCCGGAGGGGTGGAGCCGAACGGGAAGCCGACGCTTTCGTCGCACCCGGCTTTCCACGTGTTCGCCATCTCATCGTTGGTGGCGCTCTGCTT CTCCGTCACCTCGCTGGTTATGTTTCTCTCCATCTTGACGTCGCGGTTCCAGGAGAAGGACTTCGGCGGTGACTTGCCGAGGAAGCTTCTCATAGGGCTG TCGTCGTTGTTTGTTTCGATTGCAGCGGTGTTGGTGAGCTTCTGCGCCGGACATTTCTTCGTGATGAAGGATGAGCTCAAGTCCGCGGCGTACCCGGTTT ATGCGCTGACGTGTCTGCCAGTCAGCTTCTTCGCTGTCGCACAGTTCCCTCTTTACCTTGACCTTGTTCGCGCCACTTTCCAGCGGGTCCCGCGCCGCAG CTATATGGTTGTTCCTCCTTGA
AA sequence Show only first row Show all	>Lus10014701 pacid=23165568 polypeptide=Lus10014701 locus=Lus10014701.g ID=Lus10014701.BGIv1.0 annot-version=v1.0 MDGGGIETNHLDAIRRDLFQSAMKGDWRRVLHTYETEPSAYAAQITKPLDTALHIAVSDGQEHIVEQLVDVMYSNRAEEAEAALRVKNDHGNTPLHIAAT LGSLAMCVCIAEKDRSVVGVRNEDSETPLFLAAAHGKKKAFLSLHRICGAEECRQHYRGKDGETILHAAIAGEYFDLAYQIIILYRELVNAVNTQGRTPL HLLASKPGAFRSGSHLGGYDQLIYYLRRRFRAPKCQLEDTENQRPSSRHVEGTLIRAFSQLILTDQGSQQVLPLNYDTCFEFVKLAFKALFIILGYGSTQ LGKLRIKKEKHAWSVQIMNELLKDAETYVYEYNGRSPHPIETPLEFTDVLSVGAGEDPNKHKHVETIETPILIAAKNGITEIVEKILDLYPVAINDMNMQ KKNIVLLAVENRQSHIYERLLKRIVMRESVFRKVDHRGDSALHLAAALGQHKPWRIPGAALQMQWEIKWYEFVKNSMPYNFFIKHNKDGNSPRDIFSEQH ADLVRSGGEWLTNTSESCSVVAALIATVAFATSSTFPGGVEPNGKPTLSSHPAFHVFAISSLVALCFSVTSLVMFLSILTSRFQEKDFGGDLPRKLLIGL SSLFVSIAAVLVSFCAGHFFVMKDELKSAAYPVYALTCLPVSFFAVAQFPLYLDLVRATFQRVPRRSYMVVPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	0	1
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	1.4	0.9050
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	1.7	0.9026
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	1.7	0.9105
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	4.5	0.8869
AT2G23700			Protein of unknown function, D...		Lus10011308 [exp]	7.0	0.8387
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	8.5	0.8428
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	8.8	0.8171
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	8.9	0.8193
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	9.5	0.8249
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	9.6	0.7984

Compare expression of checked genes

Lus10014701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.