Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19670 229 / 3e-73 CORI1, ATHCOR1, ATCLH1 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) AT5G43860 189 / 1e-57 ATCLH2 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004076 [exp] 607 / 0 AT1G19670 234 / 6e-75 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Lus10039372 [exp] 186 / 3e-56 AT5G43860 392 / 2e-137 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214200 [exp] 242 / 9e-78 AT1G19670 237 / 7e-76 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Potri.010G082300 [exp] 193 / 7e-59 AT5G43860 370 / 1e-128 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1) Potri.005G214100 [exp] 57 / 4e-10 AT1G19670 59 / 2e-11 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07224 [flax] [poplar] Chlorophyllase Chlorophyllase
Representative CDS sequence Show only first row Show all	>Lus10014702 pacid=23165624 polypeptide=Lus10014702 locus=Lus10014702.g ID=Lus10014702.BGIv1.0 annot-version=v1.0 ATGGCAGTGGCTGCTTTCTTATTCTTCCTACTGCTGCTCATATCCACACCAGTACTACTGATTTCATGCGGAAGCTCTCCGCTTCCAGTATTCGATAAAG GACAATTCGAGTTCGCACGTCACATCGTCCAAGTAAACAGCAGCAATCCTACTGCGCCTCCGAGGCCGCTCTTCATGGTTGCTCCGACCCAACCCGGAAA ATACCCGATATTCCTCTTCGCACACGGCACCTTCATTAACAGCAAACTCTACTCCACTCTCCTCTCCCACATTTCTTCCCATGGCTACATCGTCGTCGCC CCACTGTTATTCGATTCAATGTTCAACATGCCAAGCCAGCTGGAGGAAATCGACTACCTAGCGCAAGTCATAAGATGGCTCCCAACGGGCCTATCTTCCC AACTCCAAAACGGCGTCGTCCCAGATTTTGACCACCTAGCCGTAGGAGGCCACAGCCGAGGTGGCAAATCCTCGTTTGCTCTAGCACTCGGGTACAAACG CAAACACGATGATTTGCCCATCTCGGCCTTGGTAGGGATCGACCCGGTGGCAGGAAGCAGCAAGGACTCGCGGACGTATCCAAAAATACTCACCTACCAA CCCGAGTCGTTCAACCTATCCATGCCAGTCACAGTGATTGGGTCCGGTTTGGGAAACCGGTCAGCCTTCATAGGTGTCCCAGCATGTGCGCCAAACGAGG TGAGCCACGTGGAGTTTTACTACGAGTCCAGGGCTCCGAAGAGCCACCTGGTACCCGCGGAGTTCGGACACATGGACATGGTGGACGACGTGAGCCCTCT GGACGTGGTGAATTGGACGATGGTGAATGCTATGTGCAAGAGTGGGGGTAGGTGGTTCAATTCGAAGAATAAGATGAGGAGAACCGTGGGAGGGATCGTG GTTGCTTTCTTGAACTTTTGTTTCGACGGGAAAGGGGATGGTGATTATCTCACTATCTTGACGAAACCTGGGGTTTCTCCTGCTGTGCTTCAGAAGCCAC AGTACCAGTTCAGCAGTTTGGCTCAGGAATAA
AA sequence Show only first row Show all	>Lus10014702 pacid=23165624 polypeptide=Lus10014702 locus=Lus10014702.g ID=Lus10014702.BGIv1.0 annot-version=v1.0 MAVAAFLFFLLLLISTPVLLISCGSSPLPVFDKGQFEFARHIVQVNSSNPTAPPRPLFMVAPTQPGKYPIFLFAHGTFINSKLYSTLLSHISSHGYIVVA PLLFDSMFNMPSQLEEIDYLAQVIRWLPTGLSSQLQNGVVPDFDHLAVGGHSRGGKSSFALALGYKRKHDDLPISALVGIDPVAGSSKDSRTYPKILTYQ PESFNLSMPVTVIGSGLGNRSAFIGVPACAPNEVSHVEFYYESRAPKSHLVPAEFGHMDMVDDVSPLDVVNWTMVNAMCKSGGRWFNSKNKMRRTVGGIV VAFLNFCFDGKGDGDYLTILTKPGVSPAVLQKPQYQFSSLAQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10014702 [exp]	0	1
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	1.0	0.9383
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013724 [exp]	6.0	0.9105
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	10.6	0.8444
AT3G17930			unknown protein		Lus10042280 [exp]	13.3	0.8787
AT2G38570			unknown protein		Lus10022733 [exp]	16.3	0.8373
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	16.4	0.8685
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10002286 [exp]	20.1	0.8782
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10000057 [exp]	20.3	0.8382
					Lus10022623 [exp]	23.6	0.7636
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	24.2	0.8552

Compare expression of checked genes

Lus10014702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.