Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14740 221 / 2e-71 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G22810 219 / 8e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G43870 215 / 1e-67 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G63300 194 / 4e-60 FKD1 FORKED 1 (.1.2) AT4G32785 111 / 4e-31 unknown protein AT5G47440 83 / 2e-18 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G17350 81 / 1e-17 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 81 / 3e-17 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G57770 44 / 8e-05 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039370 [exp] 186 / 5e-58 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 185 / 9e-56 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 154 / 2e-44 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10004079 [exp] 147 / 2e-42 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10009509 [exp] 117 / 5e-32 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10021903 [exp] 106 / 2e-27 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004734 [exp] 97 / 4e-23 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213800 [exp] 269 / 2e-88 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 269 / 3e-88 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.010G082400 [exp] 237 / 6e-76 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 233 / 3e-74 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.018G042000 [exp] 106 / 2e-26 AT4G32785 159 / 1e-47 unknown protein Potri.003G077900 [exp] 100 / 3e-24 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 87 / 9e-20 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10014703 pacid=23165657 polypeptide=Lus10014703 locus=Lus10014703.g ID=Lus10014703.BGIv1.0 annot-version=v1.0 ATGCGGATGGCCTCTGCGGCGACTTTAGTGGCGGCGCAGTGCGTTGAAGCTGCCGAAGCGTTGGGAGCTGAGCGAGAGCATCTTGCTTCTGTCGTCAGCT CCGCCGTCAACGTCCGCTCTCACGATGACATCACAACCCTCACCGCCGCTGCAGCGACAGCTCTGAGAGGGGCGGCGACGCTGAAGGCGAGGGCTTTGAA GGACGTGCTGAACGTGGCGGCGGTGATTCCGATAGACAAAGGGATTGGTATTTGTGGAGTTGGTAATGGCGGCGGAGGCAGAGGTGGAAGTGGTTACAAA GATAACAACAGTGAAGAGTTTTCCCCTGTTACCGTCGACGGGTTTGTGGGTGCAGAGTTTCTAGCTCGTGGAACAGAGCTTCTCAAAAGGACCCGCAAAG GGGATCTGCACTGGAAAATGGTCTATGTTTACATTCACAGAACAGGGGAGGTGATGCTAAAGATGAAAAGCAGGCACGTTGCAGGGGCGATCACCAAGAA GAAAAAGAATGTGGTACTGGAAGTACACAAGGATCTTGCAGCGTGGCCAGGGAGGCACCTTCTCGACGACGGAGATGAGCGTCGGTACTTCGGGCTGCAG ACTTCGGCCAGAGGGCTTGTGGAGTTCGAATGCAGGAACCAACGAGAGCACGACATTTGGACTCAAGGCGTCTCCAAGCTTCTCTCCATTGTTGCCCAAA GGAAACACAGACGCTGCTGA
AA sequence Show only first row Show all	>Lus10014703 pacid=23165657 polypeptide=Lus10014703 locus=Lus10014703.g ID=Lus10014703.BGIv1.0 annot-version=v1.0 MRMASAATLVAAQCVEAAEALGAEREHLASVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKDVLNVAAVIPIDKGIGICGVGNGGGGRGGSGYK DNNSEEFSPVTVDGFVGAEFLARGTELLKRTRKGDLHWKMVYVYIHRTGEVMLKMKSRHVAGAITKKKKNVVLEVHKDLAAWPGRHLLDDGDERRYFGLQ TSARGLVEFECRNQREHDIWTQGVSKLLSIVAQRKHRRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22810			Plant protein of unknown funct...		Lus10014703 [exp]	0	1
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	4.7	0.9593
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10014704 [exp]	6.0	0.9555
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	6.5	0.9563
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	8.9	0.9344
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	9.3	0.9589
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10030723 [exp]	11.0	0.9444
AT4G36970			Remorin family protein (.1)		Lus10027302 [exp]	15.8	0.9003
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	16.5	0.9465
					Lus10015654 [exp]	18.0	0.9498
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	20.8	0.9498

Compare expression of checked genes

Lus10014703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.