Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63300 108 / 5e-28 FKD1 FORKED 1 (.1.2) AT3G22810 74 / 1e-15 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G43870 54 / 9e-09 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G14740 54 / 1e-08 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT4G17350 46 / 5e-06 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 45 / 7e-06 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004079 [exp] 172 / 2e-53 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10039370 [exp] 79 / 1e-17 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 79 / 1e-17 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 71 / 1e-14 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10021903 [exp] 61 / 2e-11 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004734 [exp] 42 / 0.0002 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213800 [exp] 114 / 4e-30 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 112 / 3e-29 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.010G082400 [exp] 76 / 2e-16 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 74 / 1e-15 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.003G077900 [exp] 47 / 3e-06 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 46 / 5e-06 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.018G042000 [exp] 41 / 0.0002 AT4G32785 159 / 1e-47 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation
Representative CDS sequence Show only first row Show all	>Lus10014704 pacid=23165567 polypeptide=Lus10014704 locus=Lus10014704.g ID=Lus10014704.BGIv1.0 annot-version=v1.0 ATGGAAGAAACCCCTTTAATCAGACCAACCCACCACTTCCCCACCACCACACCCACAGCCATGATTCCTCTGCCAGAGTCCCCAAAACTACCCATGGAAT TCCTCTCAAGATCCTGGAGCGTCTCTGCCCTCCAAGTCTCCAAAGCCTTAGTCTCCAACTGCTTATCTTCTTCCATCTCCACCAACTCCCTTTCCTCCTC CTCTTCTTCCACCATCCCTGAAGAACTCGCCACTCCTCCCGCCGAACTCTCCCAGCCCAACAACAATCAGTTCTCCTTCGCTTCCTCTGCCAGCTCCCAG CTTGTTCTTGAGCGCATCATGTCCCAGTCCGAAGTTTCGCCATTGACGTCAGGCAGGCTTTCTCACAGCAGCGGACCTTTGAACTTCGGCGAACCAGATA GCCCTCCTCAAACTCTTTCGCCCTCTGACGACTTCGAAGACGTCGTTAAGAGTGTTTCGTGGTCTTGTCTTGTCTTGTCTGCCAAAGGTTTGACGATGGG TATACTCTGTTTTGATCACCTTCATGATTAA
AA sequence Show only first row Show all	>Lus10014704 pacid=23165567 polypeptide=Lus10014704 locus=Lus10014704.g ID=Lus10014704.BGIv1.0 annot-version=v1.0 MEETPLIRPTHHFPTTTPTAMIPLPESPKLPMEFLSRSWSVSALQVSKALVSNCLSSSISTNSLSSSSSSTIPEELATPPAELSQPNNNQFSFASSASSQ LVLERIMSQSEVSPLTSGRLSHSSGPLNFGEPDSPPQTLSPSDDFEDVVKSVSWSCLVLSAKGLTMGILCFDHLHD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10014704 [exp]	0	1
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	1.0	0.9721
AT3G22810			Plant protein of unknown funct...		Lus10014703 [exp]	6.0	0.9555
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	6.0	0.9699
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	7.7	0.9596
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	8.5	0.9620
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	8.8	0.9643
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	10.7	0.9571
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	13.7	0.9474
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	14.1	0.9505
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	15.0	0.9558

Compare expression of checked genes

Lus10014704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.