Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63290 276 / 8e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G13400 76 / 2e-15 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004080 [exp] 577 / 0 AT3G63290 374 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10033085 [exp] 66 / 1e-11 AT4G13400 560 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017737 [exp] 64 / 5e-11 AT4G13400 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049300 [exp] 339 / 1e-114 AT3G63290 387 / 4e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.018G076700 [exp] 68 / 2e-12 AT4G13400 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014705 pacid=23165586 polypeptide=Lus10014705 locus=Lus10014705.g ID=Lus10014705.BGIv1.0 annot-version=v1.0 ATGCAACTGAAATATGTCGAAGCTTTAGAGGGCAGTCAAGCTGTTAATATGCCATTGGACTTGTGGATGGCTGATTCAGAAGTTTTAGCTGCCGGGGGGA ACGAATTTAGTGATCTCGCTGATGTTTTTAAGGAGCTAGGATATTGCATGATGCAGCTAGGATTATATCTTGCTCGAGTGTGTGATAAAGCAATGGGCAG TAAAGAGTTGGAGAGAAGCTTGCTTGAATCAGGCACAGCAAAGGGACGTCTTATACACTATCATTCAAGTGTTGACAATCTCGTTCAAAAAGGGAGTCTC AGAAACATGGGAATCTCGAACAAAACTGCCAATGTGAAAGGACGCAAAGAACGACCAATGAAGGGTGAGCAAAGAAAGTTTGAAAATTTGGATTTCATTA CATGTGGAAGTCATGATAAGCTGTGGCAGCAATGGCATTATGATTATGGCATCTTCACTGTTCTAACAGCACCTATGTTTCTTGGTCCGTCGGCACAAGT TCCAGTTAAAGAATGCTCTTATCCCCGTGGGAATACGAACTTACAAATCTTCAATCCAGACAAAAATAATGTCTGTATGGTTCGAACTTCTCCAGAAAAT TTCATCATTCAAGTTGGGGAGTCAGCTGATATATTGTCCAAGGGAAAGCTACGTTCAACACTTCATTGCGTCAACAGACTACAAAGGATGGAGTTCTTGA GTAGAGAAACGTTTGTGGTGTTTTTGCAGCCTGCTTGGAGCAAAACCTTTTCACTCACTGGTCATAAAATGGTTGTGCAGTCTTGTTCAGATGACCAATG GTCTAATGATGGGAACGGCCTCTCGAATTCGGGGCATGGTTCTAATAGTTTTAAGGAAGATGTTCATAAGTTGGTTCCACCGTTATATTCACGCTTAAAA GAAGGAATGACATTTGCTGAGTTTGCTCGTGAAACGACCAAGCAGTATTATGGGGCCAGTGGGTTGCAGTCAAGCAGATAG
AA sequence Show only first row Show all	>Lus10014705 pacid=23165586 polypeptide=Lus10014705 locus=Lus10014705.g ID=Lus10014705.BGIv1.0 annot-version=v1.0 MQLKYVEALEGSQAVNMPLDLWMADSEVLAAGGNEFSDLADVFKELGYCMMQLGLYLARVCDKAMGSKELERSLLESGTAKGRLIHYHSSVDNLVQKGSL RNMGISNKTANVKGRKERPMKGEQRKFENLDFITCGSHDKLWQQWHYDYGIFTVLTAPMFLGPSAQVPVKECSYPRGNTNLQIFNPDKNNVCMVRTSPEN FIIQVGESADILSKGKLRSTLHCVNRLQRMEFLSRETFVVFLQPAWSKTFSLTGHKMVVQSCSDDQWSNDGNGLSNSGHGSNSFKEDVHKLVPPLYSRLK EGMTFAEFARETTKQYYGASGLQSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10014705 [exp]	0	1
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	14.8	0.7292
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	23.9	0.6737
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027351 [exp]	27.1	0.6604
AT1G62520			unknown protein		Lus10032250 [exp]	35.1	0.6153
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	38.3	0.6638
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10004080 [exp]	39.1	0.6214
AT3G27470			Protein of unknown function (D...		Lus10003659 [exp]	55.0	0.6001
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	67.7	0.6270
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	70.1	0.6145
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	77.5	0.6110

Compare expression of checked genes

Lus10014705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.