Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63370 891 / 0 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 600 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 592 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 575 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 567 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G18750 566 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 544 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 548 / 2e-179 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 533 / 3e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 509 / 7e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004081 [exp] 1818 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 613 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 606 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 600 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 583 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 580 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 578 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 563 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013578 [exp] 556 / 0 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215500 [exp] 1274 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 655 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 625 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 607 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 599 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 572 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 560 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 558 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 551 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 549 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014707 pacid=23165662 polypeptide=Lus10014707 locus=Lus10014707.g ID=Lus10014707.BGIv1.0 annot-version=v1.0 ATGGCTGCTACGTCTTTCCCGCTATCTAATCATCTCCATACCTCCTCGCCGCCTGCAGTAATGTCCAAACCCCACTCTACACAATCAGTCATTTCTCTTC GGGAGCTATGCAAGCAAGGAAGCCTCAAAGAAGCTTTCTCTTCCTTTACCGCATTGTTGACTCTCCATGGTGGCTCACTCCTCGCCAACCCGGACGAGGT TTACGCGCCACTACTTGAGCTCTGCGCCACGAGGAAGGATTCGTCACAGGGTCGACAGGTTCATGCCCATATCCTGAAATCCGGAGTTGCGACATTAGAC CCGGCTTTCTTGAGCACGAAGCTTGTGTTTATGTACGGCAAGTGTGGCTACGCCTGTGATTCACACAAGGTGTTCGACGAAATGACTGATAGAACTGTCT TCACTTGGAATGCTATGGTGGGTGCTTACATGTCGAATGGACAACCTCTAGAAGCTCTCCGATTGTACAGAGAGATGCGGGTTTCTGGTTCCTGTCCTGA TTCTTGTACTTTTCCTTGTGTTTTGAAAGCATGTGGAGCAGTGGGAGATCTTCGTTATGGAGCGGAAGTTCATGGACTCGCCATCAAAAGTGGGTGTGCT TCTGTAGCATTTGTTGCTAATGCTATTGTTGCTATGTATTCCAAGTGCAAGGATTTGGACAGCGCGAGGAAATTGTTTAACAGGGTGAATGGAGGAGACG ATGATGTGTTGTGGAACTCGATGATTACTGCATATTCTGAAAATTTGCAGTACCTAGAGGCATTGGAAATTCTTAGAAAAATGAGGATGGTGGGTGTTTC TCCTAGCACTTACACATTTGTTGCTGCTCTTCAAGCTTGTCAGGACTCTTCTAGTAAACTAGGAATGGAAATCCACGCTGCTACGTTGAGATCAAGTCAT TTTCTCGACGTCTATGTGGCAAATGCGCTGATAGCTATGTATGTGAGACAGGGGATGATGGTTGAGGCTGCCAGAATTTTCAGTAAGGTGGATGAAAAGG ACAATATCACGTGGAATTCCTTGCTTAATGGGTTTATCCAGAATGGTCTATTCGCTGAAGCATTGAAGTTCTTCCATGATTTGCTTGATTCTGGTATAAA ACCGGATGAGGTATCTCTAACAAGCATCATTGGAGCATGTGGAAGATTGGGTTATTTGTTAAATGGAAAAGAAAGTCATGCTTACGCGATAAGGATGGGG TTTAGTTCTCACTTGCATGTTGGAAACACAATTATTGATCTTTATAACAAGTGTTCTTTTGTGAGTTACATGGGCCGTACTTTTAGGATGATGCCTGACA AAGATATCATTTCCTGGACGACAATTGTAGCTGGCTATGCTCAGAACAGTCGCCATCTAGAGGCCTTGGGATTGACCAGGCAAGCGCAAATGGAAGGGAT GTGCGCTGATGCAATGATGATTGGCAGCATTCTACTGGCTTGCAGTGGATTGAAATACTTTTCCAAAGTAAAAGAAGTTCATGGCTACATGATAAGACAC AGTCTAACTGATCATGAGCTGAGAAATACTCTGGTTGATGTGTATGGGGAGTGTGAACAACTTGATTATGCTGCTCGAGTGTTCCAGTTAATTGAAGACA AGGATGTTATATCTTGGACGAGCATGATTTCGTTATGTGTCAATAATGGTCACGCAGATGAAGCTCTTGAAGTTTTCCGCTTGATGAGAGAGATGGGAGT CCAGCCTGATTCCATTAACCTGGTGAGCCTACTCTCTGCCGTCACTAACTTATCATGCTTGAACAAAGGGAAAGAAATCCATGGTTTCGTAACAAGGAAG ATGTTTCTGTTAGAAGGTTCGATGGCAAACTCGCTTGTTGATATGTATGCTCGTTGTGGGAGTCTAGAGAATGCACGCAAGGTCTTCAGTTCTATAAGAA ATAAAAGTCTTGTTACATGGACTACTATGATTAATGCATATGGAATGCATGGTAAAGGCAAAGTAGCAGTTGAACTGTTCAGTAGAATGGAGGATAAAAA ATTGATCCCAGATCATATTACCTTCTTGACACTTCTTTATGCATGTAGCCATTCAGGATTGATTGATGAAGGTAAAAGTTTTTTTGAACTTATGAAATAC AAGTATCAACTAGAGCCCTGGCAGGAACATTATGCTTGTTTGGTCGATCTTCTGGGTCGTGCAAACCGCTTGGAAGAGGCATTTCAATTTGTCATGGACA TGAAAATTGAACCTGAACCTGAAGTTTGGTGTGCCCTCTTAGCTGCTTGCCAAGTTCACTCCAATAAGGAACTTGGAGAAAAAGTGGCGCAGAAGCTTTT GGAGTCGAACACAGAAAATCCAGGTAATTATGTGTTAGTATCCAATTTGTTTGCTGCTGAAAGTCGTTGGAAAGATGTCCAAGCAGTGAGAATGCGGATG AAAGCTGGCGGGTTGCAGAAAAGTCCAGGATGTAGTTGGATGGAGGTAGGAAACAAGGTTCATACATTCATTGCTAGAGACAAGTCTCACCCGGATTCTC GTAAGATTTATCAAAAATTGGCTGACATTACTCAGCAGTTAGAGAGTGAAGGAGGCTATGTGGCCCAGACAAATTTAGTCTTGCATAATGTAGGGGAGCA AGAGAAAGTACAGATTCTGCATGGTCATAGTGAACGACTGGCTATAGCTTATGGTTTGTTAAGCACTTCTGAGGGCACCCCAATTCGGATCACAAAGAAC CTTAGGATATGTGATGATTGCCATGCTTTCTGTAGATTAGTATCAAAATTGTATGATCGTACTCTGGTAATCAGGGATGCCAGCAGATTTCATCATTTTC AGGATGGTGTCTGCTCTTGTGTCGATTTCTGGTGA
AA sequence Show only first row Show all	>Lus10014707 pacid=23165662 polypeptide=Lus10014707 locus=Lus10014707.g ID=Lus10014707.BGIv1.0 annot-version=v1.0 MAATSFPLSNHLHTSSPPAVMSKPHSTQSVISLRELCKQGSLKEAFSSFTALLTLHGGSLLANPDEVYAPLLELCATRKDSSQGRQVHAHILKSGVATLD PAFLSTKLVFMYGKCGYACDSHKVFDEMTDRTVFTWNAMVGAYMSNGQPLEALRLYREMRVSGSCPDSCTFPCVLKACGAVGDLRYGAEVHGLAIKSGCA SVAFVANAIVAMYSKCKDLDSARKLFNRVNGGDDDVLWNSMITAYSENLQYLEALEILRKMRMVGVSPSTYTFVAALQACQDSSSKLGMEIHAATLRSSH FLDVYVANALIAMYVRQGMMVEAARIFSKVDEKDNITWNSLLNGFIQNGLFAEALKFFHDLLDSGIKPDEVSLTSIIGACGRLGYLLNGKESHAYAIRMG FSSHLHVGNTIIDLYNKCSFVSYMGRTFRMMPDKDIISWTTIVAGYAQNSRHLEALGLTRQAQMEGMCADAMMIGSILLACSGLKYFSKVKEVHGYMIRH SLTDHELRNTLVDVYGECEQLDYAARVFQLIEDKDVISWTSMISLCVNNGHADEALEVFRLMREMGVQPDSINLVSLLSAVTNLSCLNKGKEIHGFVTRK MFLLEGSMANSLVDMYARCGSLENARKVFSSIRNKSLVTWTTMINAYGMHGKGKVAVELFSRMEDKKLIPDHITFLTLLYACSHSGLIDEGKSFFELMKY KYQLEPWQEHYACLVDLLGRANRLEEAFQFVMDMKIEPEPEVWCALLAACQVHSNKELGEKVAQKLLESNTENPGNYVLVSNLFAAESRWKDVQAVRMRM KAGGLQKSPGCSWMEVGNKVHTFIARDKSHPDSRKIYQKLADITQQLESEGGYVAQTNLVLHNVGEQEKVQILHGHSERLAIAYGLLSTSEGTPIRITKN LRICDDCHAFCRLVSKLYDRTLVIRDASRFHHFQDGVCSCVDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	0	1
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	2.8	0.9224
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	3.2	0.8720
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	3.5	0.8748
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003249 [exp]	5.7	0.8716
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027533 [exp]	8.2	0.8811
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	8.7	0.8833
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10008830 [exp]	11.7	0.8345
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	12.9	0.8873
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	15.3	0.8422
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	16.7	0.8743

Compare expression of checked genes

Lus10014707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.