Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77670 660 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 179 / 5e-52 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT5G36160 118 / 1e-29 Tyrosine transaminase family protein (.1) AT5G53970 103 / 3e-24 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT4G28410 100 / 3e-23 Tyrosine transaminase family protein (.1) AT2G20610 98 / 2e-22 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28420 96 / 1e-21 Tyrosine transaminase family protein (.1.2) AT2G24850 94 / 5e-21 TAT3 tyrosine aminotransferase 3 (.1) AT4G23590 89 / 4e-19 Tyrosine transaminase family protein (.1) AT1G80360 85 / 6e-18 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004089 [exp] 729 / 0 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 274 / 2e-88 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10032388 [exp] 183 / 3e-53 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023080 [exp] 182 / 1e-52 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10033820 [exp] 177 / 5e-52 AT1G77670 172 / 2e-49 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10017704 [exp] 111 / 5e-27 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033659 [exp] 108 / 4e-26 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 107 / 1e-25 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033661 [exp] 106 / 2e-25 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175400 [exp] 676 / 0 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 670 / 0 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175600 [exp] 382 / 2e-134 AT1G77670 395 / 1e-138 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 280 / 2e-91 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 182 / 1e-52 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G079200 [exp] 180 / 5e-52 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.017G014200 [exp] 102 / 4e-24 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 102 / 6e-24 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 101 / 9e-24 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 101 / 1e-23 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10014710 pacid=23165666 polypeptide=Lus10014710 locus=Lus10014710.g ID=Lus10014710.BGIv1.0 annot-version=v1.0 ATGAGCATGCTAGCTATCAAGCACGGAGCGATCAATCTCGGTCAAGGATTCCCAAACTTCGACGGCCCTGATTTCGTTAAAGAGGCAGCTATTCAAGCCG TCAAGGATGGGAAAAACCAATACGCTCGTGGATTCGGAGTTCCAGATCTCAACGCTGCAATCTCCGAGCGGTTCAAGAAAGATACAGGGCTAGTGGTAGA CCCCGACAAAGAGATTACCGTCACTTCAGGCTGCACGGAAGCCATTGCCGCTACAATGCTGGGGTTGATTAATCCAGGCGATGAAGTGATTCTCTTTGCT CCGTTCTACGACTCCTACGAGGCTACATTGTCCATGGCTGGTGCTAAAGTAAAGTCCATAACTTTACGGCCTCCGAATTTTGCTGTTCCTTTGGAGGAGT TCAAGTCTGCCATTTCGAAGAATACCCATGCGGTTCTCATCAACACTCCGCATAATCCTACCGGGAAGATGTTTACTCGGGAGGAACTCGACACCATTGC TTCGTTATGCATCGAGAATGACGTGCTGGTTTTTAGCGATGAAGTCTACGATAAGCTGGCGTTCGAAGCGGATCATATATCGATAGCGTCTCTTCCCGGG ATGTACGAGAGGACGGTGACTTTGAACTCGTTAGGGAAGACTTTCTCGTTGACCGGGTGGAAGATCGGGTGGGCTATAGCTCCTCCTCACCTGACATGGG GAGTGCGTCAGGCACATTCGTACCTCACATTCGCTACATCCACTCCGATGCAGTCTGCTGCTGCGGTGGCTCTTCGGGCTCCGGATTCGTACTACGAAGA GCTGAAGAGGGACTACTCGGCGAAGAAGGAGATCCTGGTGAAAGGGTTGAAAGAAGTCGGGTTCGAGGTGTTCCAGTCGAGCGGGACTTACTTTGTTATT GTAGATCATACCCCTTTTGGTCACGAGAATGACGTGGCGTTCTGCGAATATTTGATTAAGGAAGTTGGCGTGGTTGCGATACCGACTAGCGTGTTCTACT TGAACCCGGAAGATGGGAAGAAATTGGTGAGGTTCACGTTCTGTAAAGACGAGGAGACGCTGAAGAGTGCGGTGGAGAGGATGAAGGAGAAGCTGAAGCG GAAGCTGAAGTGA
AA sequence Show only first row Show all	>Lus10014710 pacid=23165666 polypeptide=Lus10014710 locus=Lus10014710.g ID=Lus10014710.BGIv1.0 annot-version=v1.0 MSMLAIKHGAINLGQGFPNFDGPDFVKEAAIQAVKDGKNQYARGFGVPDLNAAISERFKKDTGLVVDPDKEITVTSGCTEAIAATMLGLINPGDEVILFA PFYDSYEATLSMAGAKVKSITLRPPNFAVPLEEFKSAISKNTHAVLINTPHNPTGKMFTREELDTIASLCIENDVLVFSDEVYDKLAFEADHISIASLPG MYERTVTLNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSYLTFATSTPMQSAAAVALRAPDSYYEELKRDYSAKKEILVKGLKEVGFEVFQSSGTYFVI VDHTPFGHENDVAFCEYLIKEVGVVAIPTSVFYLNPEDGKKLVRFTFCKDEETLKSAVERMKEKLKRKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	0	1
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	1.4	0.9262
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	1.7	0.9151
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	2.4	0.9163
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	7.2	0.9106
AT3G48980			Arabidopsis thaliana protein o...		Lus10039227 [exp]	10.2	0.8581
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	10.7	0.8845
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	12.7	0.8626
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	12.8	0.8880
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	15.0	0.8654
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	15.1	0.8596

Compare expression of checked genes

Lus10014710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.