Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63410 391 / 2e-137 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G57300 42 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024832 [exp] 412 / 2e-145 AT3G63410 494 / 5e-177 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018747 [exp] 416 / 8e-145 AT3G63410 494 / 1e-174 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003095 [exp] 162 / 2e-50 AT3G63410 136 / 1e-40 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004090 [exp] 72 / 2e-15 AT3G63410 98 / 6e-25 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047100 [exp] 431 / 5e-153 AT3G63410 508 / 0.0 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G159400 [exp] 429 / 2e-152 AT3G63410 461 / 6e-164 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G215900 [exp] 426 / 5e-151 AT3G63410 492 / 3e-176 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10014711 pacid=23165660 polypeptide=Lus10014711 locus=Lus10014711.g ID=Lus10014711.BGIv1.0 annot-version=v1.0 ATGTCGCTCAACAGTAGCAGTTGTAGACCAGCATCAAAGCCGAGGTTCATACAGCACAAGCAGGAGGCACTCTGGTTCTACAGCCTGATCTCCATCGCGT ACGACCAGTTGCTGAACCCACCCCACTGGAACGAAGAAATGAGGGACGGCGGTGCGCTCGAGCCAGCCGATCTCAACGACAGGAATTTGACTGTGGTCGA TGTCGGAGGTGGCACTGGTTTCGCCACCCTCGGGATTGTTAAGCATGTTGATGCCAGAAACGTGACCATATTGGATCAGTCACCTCATCAGCTGGCTAAG GCCAAGAAGAAGGAGCCTCTTAAGGAATGTAAGGTGTTACTTGGTGATGCTGAAGACCTGCCTTTCGACACTGATTATGCCGATAGATACGTTTCTGCTG GGAGTATTGAGTACTGGCCTGAACCGCAGCGGGGAGTAACAGAGGCATACAGGGTGTTGAAGAAAGGAGGGAAAGCGTGCATCATCGGTCCAGTCTATCC TACGTTTTGGTTGTCTCGCTTCTTTGCGGATGCCTGGATGCTCTTCCCCAAGGAGGAAGAGTACATCGAGTGGTTCGAGAAGGCTGGGTTTCGAGATGTT CAGCTCAAGAGGATTGGCCCCAAGTGGTATCGCGGTGCTCGTCGATATGGGCTTATCATCGGATGTTCTGTCACTGGTGTTAAACCTGCATCTGGAGATT CTCCTTTGAAGCTTGGTCCGAAGATCGAAGAAGTGTCGAAGCCAGAAAATCTGTTTGTGTTGTTGATGCGTTTCATTCTGGGTACCATGGCTTCAATATA TTATGGATTGTTACCCATCTACATGTGGATCAAAGATAAGATAGTGCCCGGAGGTATGCCCATCTAA
AA sequence Show only first row Show all	>Lus10014711 pacid=23165660 polypeptide=Lus10014711 locus=Lus10014711.g ID=Lus10014711.BGIv1.0 annot-version=v1.0 MSLNSSSCRPASKPRFIQHKQEALWFYSLISIAYDQLLNPPHWNEEMRDGGALEPADLNDRNLTVVDVGGGTGFATLGIVKHVDARNVTILDQSPHQLAK AKKKEPLKECKVLLGDAEDLPFDTDYADRYVSAGSIEYWPEPQRGVTEAYRVLKKGGKACIIGPVYPTFWLSRFFADAWMLFPKEEEYIEWFEKAGFRDV QLKRIGPKWYRGARRYGLIIGCSVTGVKPASGDSPLKLGPKIEEVSKPENLFVLLMRFILGTMASIYYGLLPIYMWIKDKIVPGGMPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	0	1
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	2.6	0.8388
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	4.5	0.7938
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	4.9	0.8158
AT2G48020			Major facilitator superfamily ...		Lus10029629 [exp]	5.3	0.7307
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001745 [exp]	9.8	0.7229
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	10.7	0.7498
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	10.8	0.7314
AT5G65030			unknown protein		Lus10014340 [exp]	11.0	0.7451
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009417 [exp]	11.2	0.7432
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10018119 [exp]	11.5	0.6555

Compare expression of checked genes

Lus10014711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.