Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 507 / 9e-178 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24300 83 / 9e-17 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 81 / 3e-16 AMT1;5 ammonium transporter 1;5 (.1) AT1G64780 68 / 5e-12 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G13510 67 / 1e-11 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT4G28700 64 / 1e-10 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003093 [exp] 859 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 793 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 789 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 631 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 630 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 610 / 0 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 561 / 0 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 514 / 3e-180 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 470 / 9e-164 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047000 [exp] 710 / 0 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 694 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 632 / 0 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 605 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 512 / 3e-180 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 506 / 1e-177 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 506 / 2e-177 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 501 / 1e-175 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 490 / 4e-171 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 489 / 2e-170 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10014713 pacid=23165630 polypeptide=Lus10014713 locus=Lus10014713.g ID=Lus10014713.BGIv1.0 annot-version=v1.0 ATGGCGAGCGTCCTTCCATCCAATCTGGCGACCGACGACGGGAGCCCAGACTGGCTAAATAAAGGCGACAACGCCTGGCAGCTAACCGCCGCAACCCTCG TCGGAATGCAGAGTGTCCCGGGATTAGTAATCCTCTATGGCAGCATCGTGAAAAAAAAATGGGCCGTCAACTCGGCCTTCATGGCGCTCTACGCGTTCGC CGCCGTCCTAATCTGCTGGGTCGGGTGGGGTTACCAGATGTCGTTCGGCGGGAAACTCATCCCGTTTTGGGGTAAACCAGACGTCGCGTTGGACCAGAAG TTCTTGCTCGCCAGGACTTTCGTAGGGTACTTGCCGAATGCGACGATGGTTTACTTCCAGTTTGTGTTCGCGGCGATTACTTTGATTTTGATCGCGGGAG CTTTGCTGGGGAGGATGAATTTCCATGCTTGGATGATATTTGTTCCTCTTTGGCTGACGTTTTCGTATACGATTACGGCTTTTAGTATATGGTGTCCCAC TGGGTGGCTGGCTAAGAAGGGGATTATTGATTACTCTGGTGGATATGTCATTCATCTCTCCTCTGGTGTTGCTGGCTTCACCGCTGCTTTCTGGGTGGGG CCCAGGGCCAACAAGGATAGGGAGAGGTTCCCGCCAAACAACATACTGCTGATGTTGGCAGGAGCGGGGCTGCTGTGGATGGGATGGACAGGATTCAACG GTGGAGATCCATACACAGTCAGCATAGATGCCTCGTTGGCAGTACTCAACACCCACGTATGTACTGCCACTAGCTTACTTGTGTGGCTTCTCCTTGATAT CATGTTCTTCGGAAAGCCCTCGGTCATCGGAGCCATCCAGGGCATGATCACCGGCCTCGTCTGCATCACTCCCGCCGCCGGAGTGGTGCAAGGATGGTCG GCAATAATAATGGGGATACTATCAGGAAGCATACCATGGTACACGATGATGGTCCTCCACAAGAAGATCACATTCCTCAAACACGTGGACGACACCATGG CAATCTTCCACACCCACGCAGTCGCCGGAAGCCTCGGCGGGATCCTCACCGGAATCTTCGCCGAGCCCAAGCTGTGCCGGATCTTCTACCTGGTACCCAA CTGGGAGCACTACATCGGCCTCCTCAACGGCTTCCACAACGGCCAAGGGGGAGCAGGGTTCAAGCAGTTGGGGGTCCAGTTGCTCGGAATCGTCTTCGTG GTCTTCGTCAACGTCACGGTCACCAGCGTTATCTGCGTGTTGATTAGGTACGTTGTCCCGCTGAGGCTGTCGGAGGATGAGTTGACCATCGGCGACGATG CCATCCACGGGGAAGAGGCTTATGCTTTGTGGGGAGATGGGGAGAAGTACGAGTCGAGGCACAGCTCGTTCTACGGCGCCGACCAGGATGCTCCGGCGCC TTTGACCAAGGGTGGACAGGTCGAGATGGCCTAA
AA sequence Show only first row Show all	>Lus10014713 pacid=23165630 polypeptide=Lus10014713 locus=Lus10014713.g ID=Lus10014713.BGIv1.0 annot-version=v1.0 MASVLPSNLATDDGSPDWLNKGDNAWQLTAATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLICWVGWGYQMSFGGKLIPFWGKPDVALDQK FLLARTFVGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMIFVPLWLTFSYTITAFSIWCPTGWLAKKGIIDYSGGYVIHLSSGVAGFTAAFWVG PRANKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSIDASLAVLNTHVCTATSLLVWLLLDIMFFGKPSVIGAIQGMITGLVCITPAAGVVQGWS AIIMGILSGSIPWYTMMVLHKKITFLKHVDDTMAIFHTHAVAGSLGGILTGIFAEPKLCRIFYLVPNWEHYIGLLNGFHNGQGGAGFKQLGVQLLGIVFV VFVNVTVTSVICVLIRYVVPLRLSEDELTIGDDAIHGEEAYALWGDGEKYESRHSSFYGADQDAPAPLTKGGQVEMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10014713 [exp]	0	1
					Lus10015405 [exp]	6.9	0.6632
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	7.5	0.7039
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	8.8	0.7009
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	10.6	0.6984
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	11.8	0.6984
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	13.0	0.6984
					Lus10039552 [exp]	14.0	0.6984
AT4G27170		SESA4, AT2S4	seed storage albumin 4 (.1)		Lus10040395 [exp]	15.0	0.6984
					Lus10014737 [exp]	15.9	0.6984
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	16.4	0.7201

Compare expression of checked genes

Lus10014713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.