Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) AT5G20030 114 / 3e-29 Plant Tudor-like RNA-binding protein (.1) AT2G25590 65 / 1e-11 Plant Tudor-like protein (.1) AT1G06340 61 / 4e-11 Plant Tudor-like protein (.1) AT2G47230 54 / 1e-07 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G09320 53 / 1e-07 agenet domain-containing protein (.1) AT1G26540 52 / 3e-07 Agenet domain-containing protein (.1) AT5G23780 51 / 5e-07 ATDUF9 DOMAIN OF UNKNOWN FUNCTION 724 9 (.1) AT5G13020 47 / 7e-06 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT3G06520 46 / 2e-05 agenet domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003091 [exp] 607 / 0 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10018749 [exp] 310 / 8e-105 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10024835 [exp] 303 / 7e-102 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10002437 [exp] 69 / 1e-12 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10000353 [exp] 69 / 2e-12 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 67 / 7e-12 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10037805 [exp] 62 / 2e-10 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10010060 [exp] 62 / 2e-10 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10004508 [exp] 61 / 8e-10 AT2G47230 167 / 9e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216200 [exp] 268 / 1e-87 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 257 / 4e-83 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 91 / 2e-20 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.006G250600 [exp] 91 / 3e-20 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.001G173900 [exp] 90 / 5e-20 AT4G32440 208 / 2e-63 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.005G011100 [exp] 64 / 2e-11 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 62 / 1e-10 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G151200 [exp] 58 / 2e-10 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.002G192300 [exp] 52 / 4e-07 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.001G229000 [exp] 51 / 6e-07 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10014715 pacid=23165601 polypeptide=Lus10014715 locus=Lus10014715.g ID=Lus10014715.BGIv1.0 annot-version=v1.0 ATGAAGTTCAGAAAGGGAAATCTAGTGGAAATTCTCAGCAGAGAAATCGACAACACTGATGATGGTGGTTCATGGTTTCCAGGCCAGGTGATTTCTTCTG CACTTGACGACACTCAACTCATGGTGAGATATGACTCGGTTTTCGACGATGACAATGGAGAGCCTTTAACCGAGACGGTTTCGAGAAATGAAGTAAGGCC TAGGCCGCCTATTCAAAAGGTCGAAAATTGGAAAGTTGGTGATGTAGCCGAGGTGTTTGATGCTCAATGTTGGAGGGCAGGAAGAATTGTCAAGGCATTA AAGAACAAGAACATCTTCGTCGTGAAATTATCAGAATCGGTTCAACTTAAGGAGTTCCACGAGTCTAATCTAAGGGTTCAGCTGGTCTGGCATAAGAACA AGTGGTTTGTTATTGACAAGGATGCTCAAACTAGAACCAAGTGTACTGGTGGCTTAGCTTCCAGGCCAACATCATTGAAAATGATGAAGAATCATCCAGA GAAGGTATTTGGCATGGCAAAATGCCGCAAGAGGCCTCTAAATCAAAAGAATGCCGATACCGTAGAGTCAAGTCATGATCAGTGGTTTGATGATGCTTCT AGTTTCGTGCCTAGACCTTTACAGACTGAAGATAGCAGCTACCAGCAGTGCTCCGTAGCTAGCTGTAGCTCGAATGAATTCCCTGAGTCTCATGTTCATG ACTTGCGCCAATCAGCAAATGTTGTCTCGGAGAACTCAGATGCCGAGTCCTCCTTCCCTTCCTTGCCTGCCAAGAAACAACGCCACACGAGCACTCCGAG CTCTGGCCAGAAATTCGTGGAGGTAGATATTCATGCATTAGAGTTCCATGCTTATAGGTCAACAGTGAAAGCACTGTATGTCGCGGGGCCTTTGAGTTGG GAGCAAGAACTGCTCCTGACGAATCTTCGTGAATCTCTTCACATTTCAGATGAAGAACACCTACTCCAGCTGCATCGTCTTTTGTCCACTGAAGTTCTAT AG
AA sequence Show only first row Show all	>Lus10014715 pacid=23165601 polypeptide=Lus10014715 locus=Lus10014715.g ID=Lus10014715.BGIv1.0 annot-version=v1.0 MKFRKGNLVEILSREIDNTDDGGSWFPGQVISSALDDTQLMVRYDSVFDDDNGEPLTETVSRNEVRPRPPIQKVENWKVGDVAEVFDAQCWRAGRIVKAL KNKNIFVVKLSESVQLKEFHESNLRVQLVWHKNKWFVIDKDAQTRTKCTGGLASRPTSLKMMKNHPEKVFGMAKCRKRPLNQKNADTVESSHDQWFDDAS SFVPRPLQTEDSSYQQCSVASCSSNEFPESHVHDLRQSANVVSENSDAESSFPSLPAKKQRHTSTPSSGQKFVEVDIHALEFHAYRSTVKALYVAGPLSW EQELLLTNLRESLHISDEEHLLQLHRLLSTEVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	0	1
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	2.4	0.8870
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	5.7	0.8920
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	5.8	0.9021
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	6.2	0.8496
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	6.9	0.8446
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	8.1	0.8670
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	9.2	0.8737
AT5G61530			small G protein family protein...		Lus10042986 [exp]	9.2	0.8576
AT2G03630			unknown protein		Lus10036900 [exp]	9.2	0.8295
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	10.2	0.8721

Compare expression of checked genes

Lus10014715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.