Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63430 228 / 2e-65 unknown protein AT1G74160 91 / 2e-18 unknown protein AT1G18620 86 / 8e-17 unknown protein AT3G02170 70 / 5e-12 LNG2 longifolia2 (.1) AT5G15580 46 / 0.0002 LNG1 longifolia1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003090 [exp] 1303 / 0 AT3G63430 236 / 1e-68 unknown protein Lus10018750 [exp] 954 / 0 AT3G63430 248 / 6e-73 unknown protein Lus10024836 [exp] 941 / 0 AT3G63430 246 / 3e-72 unknown protein Lus10017857 [exp] 100 / 2e-21 AT1G74160 752 / 0.0 unknown protein Lus10034678 [exp] 92 / 9e-19 AT1G74160 594 / 0.0 unknown protein Lus10021612 [exp] 63 / 5e-11 ND / Lus10034677 [exp] 54 / 2e-07 AT1G74160 182 / 1e-51 unknown protein Lus10021148 [exp] 54 / 5e-07 AT1G74160 236 / 9e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046700 [exp] 800 / 0 AT3G63430 327 / 8e-103 unknown protein Potri.005G216300 [exp] 756 / 0 AT3G63430 245 / 3e-72 unknown protein Potri.015G058900 [exp] 115 / 5e-26 AT1G74160 795 / 0.0 unknown protein Potri.017G095000 [exp] 93 / 4e-19 AT1G74160 399 / 3e-122 unknown protein Potri.012G061900 [exp] 92 / 6e-19 AT1G74160 730 / 0.0 unknown protein Potri.016G080200 [exp] 52 / 2e-06 AT3G53540 234 / 1e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014716 pacid=23165615 polypeptide=Lus10014716 locus=Lus10014716.g ID=Lus10014716.BGIv1.0 annot-version=v1.0 ATGGCGGGGGTTGTGCAGGAACAGCAATTGGAGAAGCCGATTGAGAAGCAAATGGGCTGCATGGCTGGCCTCCTTCAGATCTTCGATCGCAATCAAATTC TCACCGGAAAACGTCTCCATTCCGCTAAACGCCTTCCACCTCCTGCGGTTGCTGATTCGGCACCGGAGCCAGAAAAGTCGATTGCCTGTCAGAGGACGAT CTCACCGGAGACGGAAAAGCAGTTTGAATCGAGATCAACATTAATGCCTTCTCCAGATAAGTTGAAGCAATCTCCATTCCCCGGGTTCTCGAGTCCTGAA GTCTTACCCCCGGGTGTTAGTGTTACAACTTCTTCCAAATCGCCGGTTCCTCTTCCGGTCTTCGAAGCGACGAAATCTTCGTCGTCGAAGTTTGGCAAAG AGACACCGAGGCTTTCACTGGACAGCAGAGCGACTGTCGATGGCAAAGGACGGCTCAAGCCAACAGAGCTTCGAACAAACTGTGCGATGAATCGACAGAA GACTGTAGGACAAGATCCGGTCGATAATGAGAAGCTGCAGAACCGATCGTCAAGCGTGATCGCGAAATTGATGGGACTAGAACTGTTTCCGAAATCGGAT CCAGAACCAGCGGAGAAACAGCCGGAATTACGAAGATCGGCTTCGGAATCGAGAGCTAACAGAGATCTCCCGCAGTATCGATTCATCGATGGTGTTAATT TCCAGCTCAAGCAGCCGTCGCAAGCAATGCAAAACGTTCAGAGCTGCAATCCGCAATATAGTACAGCCAGGAATGTCGCAACCAAGAATCAGTTAGGGAT TCAAAAAGATTACAATGCTGTACGGCACAGCAGAGTCGATAGGCAACAGCCAAACAGAGCAATGGCAGGTGGACAGAGGAAGAGCTTCTATAACTCGGCA GATTTCTTCCCCGAGCCAAAACAACAGGCTGCTGTTTCCATATACGGAGAGATCGAGAAGAGGCTAAGAATGAGAGGAATCGACGAGCCGTCGAAAGATG TCGAGACTCTGAAGCAAATCCTCGAGGCTCTTCAGCTGAAAGGCCTGCTCCATTCCAAGAATCCGCAGACGAAGGGCCAAATTAATAGCCGAAGAAGCTT CGAGGACTCTCCAATAGTTGTGATGAAGCCAGCGAGATTAACTTCTCCCGTTAGCCGGCCAGCGGGGAGAATCGGCTGCGATTCTCCACCGGCGAGTTTC AGAGCCAGAGCAGGACACCGGAGGGATTCTAGTTGGTCGAATGAGTCGCTACCGGTGATGAATCCGAGGCGGGATTGGCCGGAGAGTGATCGAAACGCGC GAGCTAGAGGTAGGAACTGTAGTTCACCGACTCGAAGCGAGAGTGGCGCCAAGAGTCCTGTACGGAGGAAACTGTTGAGCGTTGAAGCGCGGAGGAGAAT CAGGAATGATACGGTGGAGCAGAGACGAGTATCTCCGGTTCAGTCTCCTAAAATCGGGTCAAGAAGATCCGGTCCAGATCAGAGCACGAATCGATCATCA AAGAATAGAAAGCGGCCGGCGGAGATTCATCGGAAGGATGATAGCAAGGCTTACAATGCCGCAGCGGAGGATGAATCGTCCACCGTTTCAGAGAGTATCT TAAGCGCCAATTCTCAATCCGAAGCCGAGAGGTCAAAAGATGGCAAAAACATACTAGATAGCTGCGACAAGCTGCTTCACAGCATTGCGGAGATGACGGC GGCCACCGCCGAGTTACAGCCGAGTCCTGTATCGGTCCTGGACGCGTCGTTTTACAGGGATGAATCTTCGCCTTCTCCCGTTATGAAACGGAATGTTGAT TTCAAAGGTCAAATAGTTGAATCAGAAGAGGATATGTGGAGCCCAACGGCTACCGTATCAGCTGAATCCGACGACTGTGAGTTCACATACGTCTCCGACA TCCTCCGCGCTTCAAGCTACTTACCGGGAGACTCAGACGTATTCCTCTTACTGGAAAAACAACAGCGTCTCCGAGGGAAAGATACATCCAAGGTGTCGAG ATTGCAGAGGAGGTTGATCTTCGACACCATTAACGAAATCCTGAAGAAAAAAAGAGAGCTGCCTCCTTGGAAGGCTGTTGTAATTAATTCCTCAAGTTCA GAAACTACGTGTTTGAACCAAATATGGCCGGAGTTCCAGAGGATTCAGGCGAGGGACGACTCGTTGGAGGAGGACTTGTTCGAGGTGATATGCGGCGTGC TGAGGAAGGATCTGGCAGGTGATGCGTTGAGCGGGTGGGAGGATTGCCACGTGGAGATGTCGGAGGTGGTGCTGGATATGGAGAGACTCGTGTTTAAAGA CTTGATAGGTGAGACAATCCGAGATCTGGCTAATTTTTCCGGCCATGGTCAAACACAAATGGCGACTGCGACTGCGTCTCGTCGGAAGTTGGACTTCTGA
AA sequence Show only first row Show all	>Lus10014716 pacid=23165615 polypeptide=Lus10014716 locus=Lus10014716.g ID=Lus10014716.BGIv1.0 annot-version=v1.0 MAGVVQEQQLEKPIEKQMGCMAGLLQIFDRNQILTGKRLHSAKRLPPPAVADSAPEPEKSIACQRTISPETEKQFESRSTLMPSPDKLKQSPFPGFSSPE VLPPGVSVTTSSKSPVPLPVFEATKSSSSKFGKETPRLSLDSRATVDGKGRLKPTELRTNCAMNRQKTVGQDPVDNEKLQNRSSSVIAKLMGLELFPKSD PEPAEKQPELRRSASESRANRDLPQYRFIDGVNFQLKQPSQAMQNVQSCNPQYSTARNVATKNQLGIQKDYNAVRHSRVDRQQPNRAMAGGQRKSFYNSA DFFPEPKQQAAVSIYGEIEKRLRMRGIDEPSKDVETLKQILEALQLKGLLHSKNPQTKGQINSRRSFEDSPIVVMKPARLTSPVSRPAGRIGCDSPPASF RARAGHRRDSSWSNESLPVMNPRRDWPESDRNARARGRNCSSPTRSESGAKSPVRRKLLSVEARRRIRNDTVEQRRVSPVQSPKIGSRRSGPDQSTNRSS KNRKRPAEIHRKDDSKAYNAAAEDESSTVSESILSANSQSEAERSKDGKNILDSCDKLLHSIAEMTAATAELQPSPVSVLDASFYRDESSPSPVMKRNVD FKGQIVESEEDMWSPTATVSAESDDCEFTYVSDILRASSYLPGDSDVFLLLEKQQRLRGKDTSKVSRLQRRLIFDTINEILKKKRELPPWKAVVINSSSS ETTCLNQIWPEFQRIQARDDSLEEDLFEVICGVLRKDLAGDALSGWEDCHVEMSEVVLDMERLVFKDLIGETIRDLANFSGHGQTQMATATASRRKLDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63430			unknown protein		Lus10014716 [exp]	0	1
AT3G17360		POK1	phragmoplast orienting kinesin...		Lus10017113 [exp]	5.7	0.9263
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	9.7	0.9005
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10018341 [exp]	10.0	0.9220
AT5G20950			Glycosyl hydrolase family prot...		Lus10034848 [exp]	10.2	0.8882
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10009840 [exp]	12.6	0.8637
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	19.6	0.8513
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10016397 [exp]	19.9	0.9109
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10018608 [exp]	20.3	0.8998
AT1G77600			ARM repeat superfamily protein...		Lus10018180 [exp]	24.2	0.8988
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	24.2	0.9018

Compare expression of checked genes

Lus10014716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.