Plant FIBer expression Database

Lus10014717 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38810 197 / 4e-66 HTA8 histone H2A 8 (.1.2.3)
AT3G54560 194 / 3e-65 HTA11 histone H2A 11 (.1)
AT1G52740 183 / 7e-61 HTA9 histone H2A protein 9 (.1)
AT4G13570 147 / 1e-46 HTA4 histone H2A 4 (.1.2)
AT1G51060 119 / 3e-35 HTA10 histone H2A 10 (.1)
AT1G54690 117 / 1e-34 HTA3 ,G-H2AX ,GAMMA-H2AX ,H2AXB histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1)
AT1G08880 117 / 1e-34 HTA5 ,G-H2AX ,GAMMA-H2AX ,H2AXA histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1)
AT4G27230 116 / 2e-34 HTA2 histone H2A 2 (.1.2)
AT5G54640 116 / 3e-34 ATHTA1, HTA1, RAT5 RESISTANT TO AGROBACTERIUM TRANSFORMATION 5, histone H2A 1, Histone superfamily protein (.1)
AT3G20670 116 / 3e-34 HTA13 histone H2A 13 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003088
[exp]
204 / 4e-69 AT3G54560 233 / 1e-80 histone H2A 11 (.1)
Lus10024838
[exp]
202 / 5e-68 AT3G54560 227 / 5e-78 histone H2A 11 (.1)
Lus10018753
[exp]
200 / 3e-67 AT3G54560 225 / 3e-77 histone H2A 11 (.1)
Lus10019449
[exp]
186 / 8e-62 AT1G52740 228 / 2e-78 histone H2A protein 9 (.1)
Lus10043301
[exp]
186 / 9e-62 AT1G52740 227 / 4e-78 histone H2A protein 9 (.1)
Lus10019447
[exp]
186 / 9e-62 AT1G52740 227 / 4e-78 histone H2A protein 9 (.1)
Lus10028044
[exp]
119 / 4e-35 AT1G08880 238 / 4e-82 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1)
Lus10003750
[exp]
119 / 4e-35 AT1G54690 239 / 7e-83 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1)
Lus10039691
[exp]
118 / 5e-35 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G216600
[exp]
202 / 3e-68 AT3G54560 209 / 5e-71 histone H2A 11 (.1)
Potri.002G046400
[exp]
202 / 4e-68 AT3G54560 209 / 4e-71 histone H2A 11 (.1)
Potri.018G032000
[exp]
187 / 2e-62 AT1G52740 223 / 1e-76 histone H2A protein 9 (.1)
Potri.018G032100
[exp]
187 / 3e-62 AT1G52740 223 / 1e-76 histone H2A protein 9 (.1)
Potri.006G249400
[exp]
186 / 4e-62 AT1G52740 224 / 4e-77 histone H2A protein 9 (.1)
Potri.006G249300
[exp]
186 / 4e-62 AT1G52740 224 / 4e-77 histone H2A protein 9 (.1)
Potri.013G028900
[exp]
119 / 2e-35 AT1G54690 220 / 4e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1)
Potri.005G040800
[exp]
118 / 7e-35 AT1G54690 221 / 2e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1)
Potri.011G131400
[exp]
117 / 7e-35 AT1G51060 200 / 1e-67 histone H2A 10 (.1)
Potri.004G031300
[exp]
117 / 1e-34 AT1G08880 150 / 6e-48 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF00125 Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence
>Lus10014717 pacid=23165649 polypeptide=Lus10014717 locus=Lus10014717.g ID=Lus10014717.BGIv1.0 annot-version=v1.0
ATGGCAGGGAAAGGAGGGAAAGGGCTTGTGGCTGCCAAGACTACTGCAGCAAACAAGGACAAGGATAAGGACAAGAAGAGGCCTACCTCCAGATCTTCCC
GTGCTGGCATCCAGTTCCCAGTGGGTAGGATCCATCGTCATCTAAAGCAAAGGATTGCTGCCCATGGCCGAGTCGGGGCCACTGCTGCGGTATACCTGGC
CTCAATTCTGGAGTACCTGACTGCCGAGGTGCTTGAGCTGGCTGGAAACGCAAGTAAGGATTTGAAAGTGAAGAGAATCACACCTAGGCATCTGCAGCTG
GCCATTAGAGGAGATGAGGAACTCGATACTCTGATCAAGGGCACCATTGCCGGTGGAGGTGTCATCCCTCACATCCACAAGTCTCTCATCAACAAGACCA
CCAAGGACTGA
AA sequence
>Lus10014717 pacid=23165649 polypeptide=Lus10014717 locus=Lus10014717.g ID=Lus10014717.BGIv1.0 annot-version=v1.0
MAGKGGKGLVAAKTTAANKDKDKDKKRPTSRSSRAGIQFPVGRIHRHLKQRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL
AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G54560 HTA11 histone H2A 11 (.1) Lus10014717
[exp]
0 1
AT1G69390 ARC12, ATMINE1 accumulation and replication o... Lus10036802
[exp]
1.0 0.9106
AT3G53900 UPP, PYRR PYRIMIDINE R, uracil phosphori... Lus10024350
[exp]
1.4 0.9009
AT1G75080 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Bras... Lus10014327
[exp]
1.7 0.8811
AT2G33610 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX S... Lus10025165
[exp]
2.8 0.8795
AT2G16030 S-adenosyl-L-methionine-depend... Lus10018506
[exp]
3.2 0.8499
AT2G37630 MYB AtPHAN, AtMYB91... ARABIDOPSIS PHANTASTICA-LIKE 1... Lus10025355
[exp]
3.9 0.8754
AT1G75080 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Bras... Lus10014326
[exp]
4.9 0.8476
AT4G35785 RNA-binding (RRM/RBD/RNP motif... Lus10017507
[exp]
5.2 0.8545
AT5G27990 Pre-rRNA-processing protein TS... Lus10006795
[exp]
5.7 0.8477
AT1G16850 unknown protein Lus10035730
[exp]
6.6 0.7956

Lus10014717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.