Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22970 325 / 1e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G38820 319 / 4e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 297 / 3e-99 Protein of unknown function (DUF506) (.1) AT3G54550 213 / 8e-67 Protein of unknown function (DUF506) (.1) AT3G07350 133 / 3e-36 Protein of unknown function (DUF506) (.1) AT3G25240 129 / 6e-35 Protein of unknown function (DUF506) (.1) AT2G39650 128 / 3e-34 Protein of unknown function (DUF506) (.1) AT1G62420 120 / 2e-31 Protein of unknown function (DUF506) (.1) AT4G32480 119 / 5e-31 Protein of unknown function (DUF506) (.1) AT1G12030 117 / 3e-30 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003087 [exp] 657 / 0 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 489 / 4e-174 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 483 / 3e-171 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 343 / 4e-115 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 325 / 8e-109 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003174 [exp] 135 / 4e-37 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10023412 [exp] 135 / 5e-37 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10000956 [exp] 132 / 1e-36 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1) Lus10002335 [exp] 129 / 2e-36 AT3G07350 177 / 7e-56 Protein of unknown function (DUF506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046300 [exp] 456 / 4e-161 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 437 / 2e-153 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 359 / 6e-123 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 353 / 1e-120 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 137 / 2e-38 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G001400 [exp] 139 / 3e-38 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 133 / 9e-37 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G188100 [exp] 132 / 3e-36 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.011G023301 [exp] 133 / 6e-36 AT1G62420 195 / 1e-60 Protein of unknown function (DUF506) (.1) Potri.008G056100 [exp] 132 / 1e-35 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10014718 pacid=23165599 polypeptide=Lus10014718 locus=Lus10014718.g ID=Lus10014718.BGIv1.0 annot-version=v1.0 ATGCCTCTGACGATGAAGATCCAGCCGATTGACTCCCACGCCCCTGAGGAGCGTAGTCGGATTGAGCCAGTGAAGCCGGTGGTGAAGTCGAGACTGAAGC GGCTGTTCGAGCGTCAGTTTCTTAGGAGCTCCGCCGCTGCTGAGAAAGTCGGTGCCGTTGACGAGCCACTGTCCAACGGTGAGCTTGAGCCAAGTTCCCT GTGCTTGGCCAACATGGTGCAGAGCTTCATCGAGGATAACAACGAGAAGCAGCACTCGGTCAAGTGTGGCCGCAACTGCTTCAACGGGAACTGCGACGAT AGCTCCGAGGACGAGTTTGACTATTTTGCAACAGCTGGTTTCGGCGACTCGAATCGTTCTTCTTCTGGTGAAGCGTGTGAAGTTCTGAAGAGTTTGGTGC CTTGTTCTACCGTCTTTGAAAGGAATCTACTGGCGGACACTGCGAAGATCGTTGATAAGAACAAGATCAACAAGCGTAATGACGAATTTTGCAGGAAGAT CGTCACTGATGGATTGTTGTCTCTCGGCTACGATTCTTCAATCTGCAAGTCCCGATGGGAGAAATCCTCGTCTCATCCTGCCGGGGAATACGAATACATA GATGTCATCGTGTCAGGAGGCGAGAGGCTTCTAGTCGACATTGATTTCCGATCGGAATTCGAGATTGCTAGATCGACAAAAGCCTACAAATCGATCCTCC AGACGCTACCACAGATATTCATCGGAAATGCAGATCGTCTCCAGAAGATCGTTGCAGTTGTATCCGAGGCAGCTAAGCAGAGCATGAAGAAGAAGGGAAT GCACGTACCGCCATGGAGGAAAGTCGAGTACGTCAAAGCCAAATGGCTCTCTCCTTACACTAGAACTACTACACAATCACCCGTTGCATCTCAAGTTTTG GTTCAAGATGGGAGTTCTAAGCTTGAAGTGACTTGCGAACAACATATCTTGGAGGCAGCTGAGCCTCATCCCAAGTCTCTTTTTGATGAAGACAGTGATG CTGAAGAAGAAGAGAAGGCATTGGCCGTGGTGGTTATGAAATGGAAGCCACCTGAGTCTCTGCCCAAGAGTTTGAGCTTTCAGACGAGAGCATAG
AA sequence Show only first row Show all	>Lus10014718 pacid=23165599 polypeptide=Lus10014718 locus=Lus10014718.g ID=Lus10014718.BGIv1.0 annot-version=v1.0 MPLTMKIQPIDSHAPEERSRIEPVKPVVKSRLKRLFERQFLRSSAAAEKVGAVDEPLSNGELEPSSLCLANMVQSFIEDNNEKQHSVKCGRNCFNGNCDD SSEDEFDYFATAGFGDSNRSSSGEACEVLKSLVPCSTVFERNLLADTAKIVDKNKINKRNDEFCRKIVTDGLLSLGYDSSICKSRWEKSSSHPAGEYEYI DVIVSGGERLLVDIDFRSEFEIARSTKAYKSILQTLPQIFIGNADRLQKIVAVVSEAAKQSMKKKGMHVPPWRKVEYVKAKWLSPYTRTTTQSPVASQVL VQDGSSKLEVTCEQHILEAAEPHPKSLFDEDSDAEEEEKALAVVVMKWKPPESLPKSLSFQTRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	0	1
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	1.4	0.9267
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	3.5	0.8757
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	5.2	0.8502
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10013001 [exp]	7.3	0.8622
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	8.1	0.8709
AT3G22970			Protein of unknown function (D...		Lus10003087 [exp]	8.5	0.8546
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	10.2	0.8671
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10010448 [exp]	10.4	0.7666
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	11.0	0.8207
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	11.3	0.8700

Compare expression of checked genes

Lus10014718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.