Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38840 957 / 0 Guanylate-binding family protein (.1) AT5G46070 138 / 7e-34 Guanylate-binding family protein (.1) AT1G03830 71 / 2e-12 guanylate-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018755 [exp] 1086 / 0 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 1054 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003084 [exp] 757 / 0 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 351 / 1e-118 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1) Lus10015390 [exp] 145 / 3e-36 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 140 / 1e-34 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 138 / 7e-34 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10015327 [exp] 136 / 3e-33 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 82 / 6e-16 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046000 [exp] 1016 / 0 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 976 / 0 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1) Potri.004G049400 [exp] 135 / 4e-33 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 135 / 4e-33 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 130 / 3e-31 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02841 [flax] [poplar] GBP_C Guanylate-binding protein, C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02263 [flax] [poplar] GBP Guanylate-binding protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014720 pacid=23165659 polypeptide=Lus10014720 locus=Lus10014720.g ID=Lus10014720.BGIv1.0 annot-version=v1.0 ATGGCAAACTGTCGACGGAATTTGTTCGCCTCACAGCTTCTTCTCCTTCTCGTCCTCTGTCTCTTCCCATCTCCTTCTCGCTCGATTGATGATTTCCACC AAGCGTTTCCTATTGTTGAACCTGCTCCAGGGCATACAAAACTCCGTCTTTCAAGTGAGGGCTTGGAAGCTATAAGACGAATAAAAAATCCAATTGCTGC TGTTGCTGTGATTGGTCCATATCGCTCTGGAAAATCGTTTTTGCTCAATCAACTTCTTTCCCTTTCTTGTGATGAAGGCTTCGGGGTGGGACATATGCGT GATACAAAGACAAAAGGAATATGGGTATGGGGAACCCCGATAGAATTAGACGTCAACGGACAAAAAACTTCTGTCTTGTACTTAGATACTGAAGGATTTG AAAGTGTAGGGAAGTCAAATGTTTATGATGATAGGATCTTTGCTCTTGCAACTGTCATGAGTTCTGTGCTTATTTATAACCTTCCTGAAACGATCCGGGA GGCTGACATTTCTCGGCTGTCATTTGCCGTTGAACTTGCTGAAGAGTTCTATGGAAGGTTTACACTTCTATCACATGGTGAAGGTGAAGATGTTGCTTTT GAACCTGCAAAACTTCTTTGGCTTATCCAACGAGATTTTCTACAGGGGAAGTCGGTACAGGAGATGGTGAATGAAGCCCTTCAACGTGTACCAAATCACG ATGGGGACAGAAATATTGATCAGGTGAATCAGATCCGAGAGTCACTGGCTATAATGGGTGATAACAGCACTGCTTTTAGCTTGCCACAGCCTCATCTCCA GCGGACAAAGCTTTGCGACTTGAAGGACAGCGATCTTGAGCAGCCATACGTTTCAAGAAGGGAAAAATTGAAAGAACTTGTTTCCAGCATCATTCGTCCC AAGATTGTGCAGGGTAAATCTCTGAATGGAGAGGAATTTGTAGCATTCCTTGAGCAGATTCTTGAAGCCTTGAATAAAGGGGAGATACCATCAACTGGAT CTCTTGTGGAGGTTTTCAACAAGGCTATCCTTGAGAGATGTTTGAAAATATACAGTGAACCGATGGCTGAATTAATGTTGCCACTACCGGAGGAGGCTGT GCAAGATGCCCATGGAAGGTCAAGAGAAACAGCAATGAAGGTTTTTGATGAACAACATTTCGGCCGTAATCATGCTAAGAAATCTGTCACGCAACTGGAT GAAGAAATTGATAAGGTTTATAAGCTCATCATTATGGCGAACGAATATCAATCTGCAAAACTTTGCGAGGCGCTATACTCTACATGTGAGGACAAAATGG ACCAACTTCAAGTTCTAAGACTTCCTTCCATGGCCAAATTCAATGCGGGGTTTCTACAATGCAATCGAAGTTTTGAGCTAGAGTGTGTTGGACCTTCGAA ATCAGCTTACGAGAATCGCATGATGAAGATGATGGGGAAGTCGAAATCTCAATTTATAAAGGAATACAACCATAGGCTGTTCAACTGGTTGGTGACCTTC TCCCTGGTGATGGTGGTGGTAGGACGGTTCATTATAAAGTTCATTTTGGTGGAGATGGGAGCTTGGATTCTTTTCATCTTCCTTGAGACGTACACTCGAA TGTTCTGGTCAGCAGAGTCGCTTTACTACAACCCGGCTTGGCATTTCATAGTAGCAACCTGGGAAACAGTTGTATACAGCCCCCTACTTGATTTGGACAG ATGGGCGATGCCGGTGTTGTTGGTAGTAGCGATGTTGCTGCTATATTGGAGGTGCTACAGCAGAAGGAAAAACGGGACAAAATGGTTGTTGCCGTTATAC AGCAGCTCGAAAAACAGTCCTAACAGAACAAGAACAGATTGA
AA sequence Show only first row Show all	>Lus10014720 pacid=23165659 polypeptide=Lus10014720 locus=Lus10014720.g ID=Lus10014720.BGIv1.0 annot-version=v1.0 MANCRRNLFASQLLLLLVLCLFPSPSRSIDDFHQAFPIVEPAPGHTKLRLSSEGLEAIRRIKNPIAAVAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMR DTKTKGIWVWGTPIELDVNGQKTSVLYLDTEGFESVGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRFTLLSHGEGEDVAF EPAKLLWLIQRDFLQGKSVQEMVNEALQRVPNHDGDRNIDQVNQIRESLAIMGDNSTAFSLPQPHLQRTKLCDLKDSDLEQPYVSRREKLKELVSSIIRP KIVQGKSLNGEEFVAFLEQILEALNKGEIPSTGSLVEVFNKAILERCLKIYSEPMAELMLPLPEEAVQDAHGRSRETAMKVFDEQHFGRNHAKKSVTQLD EEIDKVYKLIIMANEYQSAKLCEALYSTCEDKMDQLQVLRLPSMAKFNAGFLQCNRSFELECVGPSKSAYENRMMKMMGKSKSQFIKEYNHRLFNWLVTF SLVMVVVGRFIIKFILVEMGAWILFIFLETYTRMFWSAESLYYNPAWHFIVATWETVVYSPLLDLDRWAMPVLLVVAMLLLYWRCYSRRKNGTKWLLPLY SSSKNSPNRTRTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	0	1
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	2.2	0.7341
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	8.7	0.6987
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	13.4	0.6661
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	13.4	0.6501
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	13.6	0.6894
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	16.1	0.7082
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	21.5	0.6722
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	25.2	0.6811
AT3G01720			unknown protein		Lus10014878 [exp]	31.4	0.6263
					Lus10003479 [exp]	32.0	0.6941

Compare expression of checked genes

Lus10014720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.