Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38860 469 / 2e-165 YLS5 Class I glutamine amidotransferase-like superfamily protein (.1.2.3) AT3G54600 450 / 7e-158 Class I glutamine amidotransferase-like superfamily protein (.1) AT3G02720 353 / 6e-120 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G53280 51 / 7e-07 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010964 [exp] 342 / 4e-115 AT3G02720 635 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10031360 [exp] 340 / 1e-114 AT3G02720 624 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10003083 [exp] 244 / 2e-79 ND 173 / 2e-52 Lus10003084 [exp] 223 / 4e-67 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G076000 [exp] 354 / 5e-120 AT3G02720 608 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143880 [exp] 353 / 8e-120 AT3G02720 650 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076200 [exp] 352 / 2e-119 AT3G02720 603 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143940 [exp] 349 / 5e-118 AT3G02720 609 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G075900 [exp] 312 / 4e-104 AT3G02720 562 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF01965 [flax] [poplar] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Lus10014721 pacid=23165616 polypeptide=Lus10014721 locus=Lus10014721.g ID=Lus10014721.BGIv1.0 annot-version=v1.0 ATGGGTTCCCTGGCTCAGAAGTCTGCTCTGATCATATGCGGCGACTACATGGAGGACTACGAAATCGCTGTCCCCTTCTTCGTCCTCCGTGCTTTCGGGG TCCGCGTCGATTGCGTCTCCCCCGGCAAGGTCTCCGGCGAAAAATGCTTCACCGGCGTTCACGACTTCATGGGCTTCGAGCTGTACACAGAGCTGCCAGG GCATTTCTTCACCCTGAACGCCAACTACACCGAAGTAAACCCAGACTCCTACGACGCCCTCATCATCCCCGGCGGGAGATTCACGGAGCTCCTCAGCACA GATGACAAGTTGGTTGAGACGGTTAGGAGGTTCGCGGCGAACGGGAAGCCGGTGGTTACGAGCTGCCACAGCCAGATCATGCTGGCGGCGGCTGGGCTGC TGCAGGGGAAGAAGTGCACGGCGTTCACGAGCTTGAAGCCCGTGATAGAGCTGGTCGGCGGGATCTGGTGGGAGGAGCTGGCCGGCGGGATCTGGTGGGA GCAGCCTGGGATTCAGTCGGTTCTCGACATCACCGCCTGCCTCAAGGACGGCAACCTGATCAGCTCCATCGGGTGGCCGGCTCACGGCGAGTATATGAAG GTCTTGCTGGAGTCGATTGGGGCTAAAGTCTCTGGCCCTCCCGCCAAAACTACTTCTGTTCTTGTCGTTTTCGCGGATTATGCGGAAGATTACGAAGCAA ACGTCCCATTCAGGGCCCTACAAGGCCTGGGCTGCCACGTGGACGCAGTGAGCCCAACAAAGAAAAGAGGAGAGAGCTGCCCCACCGCCATCCACGACGA CGAAGGGGCCCAGGTATGTAGCGAGAAGCGCGGCCACAACTTCATCGCCACGGCCAACTGGGACGACGTCGACGTCGACAAATACGACTGCCTCGTCTTG CCAGGAGGCCGGGCCCCGGAGCTTCTTCTCTCCAACGAGAAGGTGATTTCAATGGTCAAGGAATTCGCCGCCAAGGATAAGGTCATCGGCGCAATTGGGC AAGGGAAATGGATCCTGGCTGCCGCCAACGCCCTGAAGGGGAAGAGGTGCGCCGCCGCATACGGGATGAAGGTGATCGTGAAGGTTGCCGGTGGTGAGGT GGCGGTGGACGGGGAAGGGTGCGTGACCCATGGGAAGTTGGTGACGGCGAGTGGGTGGCCGGCGCTTTCCGATTTCGTCGCGCAGTTGTCGGATGCTTTG GGTCTGTCCGTCGCCTTTTGA
AA sequence Show only first row Show all	>Lus10014721 pacid=23165616 polypeptide=Lus10014721 locus=Lus10014721.g ID=Lus10014721.BGIv1.0 annot-version=v1.0 MGSLAQKSALIICGDYMEDYEIAVPFFVLRAFGVRVDCVSPGKVSGEKCFTGVHDFMGFELYTELPGHFFTLNANYTEVNPDSYDALIIPGGRFTELLST DDKLVETVRRFAANGKPVVTSCHSQIMLAAAGLLQGKKCTAFTSLKPVIELVGGIWWEELAGGIWWEQPGIQSVLDITACLKDGNLISSIGWPAHGEYMK VLLESIGAKVSGPPAKTTSVLVVFADYAEDYEANVPFRALQGLGCHVDAVSPTKKRGESCPTAIHDDEGAQVCSEKRGHNFIATANWDDVDVDKYDCLVL PGGRAPELLLSNEKVISMVKEFAAKDKVIGAIGQGKWILAAANALKGKRCAAAYGMKVIVKVAGGEVAVDGEGCVTHGKLVTASGWPALSDFVAQLSDAL GLSVAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38860		YLS5	Class I glutamine amidotransfe...		Lus10014721 [exp]	0	1
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012499 [exp]	2.0	0.8711
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10023140 [exp]	2.8	0.8695
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10011499 [exp]	4.0	0.8576
AT5G05260		CYP79A2	cytochrome p450 79a2 (.1)		Lus10000627 [exp]	4.2	0.8660
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	4.5	0.8555
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023144 [exp]	6.5	0.8537
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	7.0	0.8500
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	8.9	0.8439
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10022673 [exp]	9.4	0.8480
AT3G13130			unknown protein		Lus10039066 [exp]	11.2	0.8464

Compare expression of checked genes

Lus10014721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.